Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3376 ATGTCAAATATTTCAGGTGATGAAAGAAGTTTGTCCTCAGGAAACACAGGAGAATTAGAAGTTCATCAAGAAAACGAACAACACCGCCTACAAAAGCACCTGCATACCTCAACTTCAGCTCCTAGTTCTGCTGCTTCCAACAATCCGAATGCTGAAATTGTTGCATTGTCACCGACGACATTGATGGCGACAAACAGATTCGTGTGTGAGATATGCAACAAAGGGTTTCAGAGGGACCAGAACCTGCAGTTGCACCGGAGAGGTCACAATCTGCCATGGAAGCTGAGACAAAGGCCGAGCACGGAGGTGAAGAAGAGGGTGTATGTGTGCCCCGAGCCATCCTGCGTGCACCATAACCCAGCTCGAGCACTGGGAGACCTGACGGGCATAAAGAAGCATTATAGCAGGAAGCATGGAGAGAAGAAATGGAAGTGTGATAAGTGCTCTAAGAAATATGCCGTCCAATCCGATTGGAAGGCTCACCAGAAAACCTGCGGTACCAGGGAATACAAATGCGATTGTGGCACCATTTTTTCCAGGAGAGATAGTTTCATCACGCACAGAGCTTTTTGTGACGCATTAACTGAAGAAAACAACCGAGTGAACCAGGGATTAACGAGCGGCATACAACCAAACTTGCAAAGTCAAATGCCAGATCTTATGTCTACCTCCTCCGAATTCAACAACTACAACCCCTATAAGAGCCCACTCAAATCTCTCACCCAAGACCTCGGACCAAGCCCATTTAAGCCCATGAGCATGGGCGGGTCCATGTTTTCCACCCCTTCTCGATCCCTCTTCGCTGGCCCAAAGCCCATCTCTCCCTCTTCCTCTACCCTGCAGCTCAGCTCCAACACCTCGTCTGCCATGGGCACCTTCAATTACTTCCAAGACAGCAAGAACGTGGGCCCAAACATTGGGTCGGCCCATATGTCAGCAACGGCTTTATTGCAGAAAGCAGCCCAAATGGGTGCTACTGCTAGCAATAGCATCAACTCTCCCATGATGCAAAAGAGCTTTGTCAGTAGTATGGCTGGTCCTGACCATAATGTGTCTTCCATTAATAAACCACCGTATTCTAGTGTCAACCCCTCCTATGACCACTTCCATTCACATCCTGATCAATCTAATTCTAATATGGCTGGGATTAGTGGGGGTGGAGCATTCACCAATCACTTGTTTCAGAAAGGCCCACAAGAAATTTCAGAGTTATTTGACGCTACTAATACTACCACTACTGGTTCTGCAATCAGTGATATGGGTATGTTCAGCCAGATTTTATTGGGAAGTGATCAGAACCCAGGAATGATGAAGAAGAATAATATGGAGCAAGAGAGCAGTAACAGTTCGAGTCTGATGCATGGGAGAGATGCAGTAGAGGGGAACCCAGTGGGGCCCAATATGGCAACGGTTCACGATTTCTTGGGAGTTGGGGGCTCAGCGAATTTTCATGAACAGCAGCAGCAAAGATTGGAGTTAGAAGCAATGAATCATCAGAGATTATCAGTTATGAATCACTTTCAACACCATCTTCCCCACGGGGATTCACCTTTGGATAAACCCATCTGGGATGTTTGA 1578 0.4708 MSNISGDERSLSSGNTGELEVHQENEQHRLQKHLHTSTSAPSSAASNNPNAEIVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRPSTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGIQPNLQSQMPDLMSTSSEFNNYNPYKSPLKSLTQDLGPSPFKPMSMGGSMFSTPSRSLFAGPKPISPSSSTLQLSSNTSSAMGTFNYFQDSKNVGPNIGSAHMSATALLQKAAQMGATASNSINSPMMQKSFVSSMAGPDHNVSSINKPPYSSVNPSYDHFHSHPDQSNSNMAGISGGGAFTNHLFQKGPQEISELFDATNTTTTGSAISDMGMFSQILLGSDQNPGMMKKNNMEQESSNSSSLMHGRDAVEGNPVGPNMATVHDFLGVGGSANFHEQQQQRLELEAMNHQRLSVMNHFQHHLPHGDSPLDKPIWDV 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3376 525 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
Dere01g3376 525 MobiDBLite consensus disorder prediction 1 20 - -
Dere01g3376 525 FunFam protein indeterminate-domain 12-like 46 114 - -
Dere01g3376 525 Gene3D Classic Zinc Finger 42 110 - -
Dere01g3376 525 MobiDBLite consensus disorder prediction 34 50 - -
Dere01g3376 525 SMART c2h2final6 108 138 IPR013087 -
Dere01g3376 525 SMART c2h2final6 143 163 IPR013087 -
Dere01g3376 525 SMART c2h2final6 67 89 IPR013087 -
Dere01g3376 525 Coils Coil 481 501 - -
Dere01g3376 525 Gene3D Classic Zinc Finger 122 201 - -
Dere01g3376 525 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Dere01g3376 525 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 29 494 IPR031140 -
Dere01g3376 525 FunFam protein indeterminate-domain 5, chloroplastic-like 121 200 - -
Dere01g3376 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Dere01g3376 525 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3376 Dere-ChrDere01 48386784 48388953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3376 48 328 IDZ Gene Family AT3G50700 55.150 2.86e-103 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere01g3376 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3376 01 48386784 48388953 Dere01g3376 01 48386784 48388953 ECH