Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3371 ATGGTGGGGAGGAGGAAGCCTTTGGTACTTGCTTCCACCAAATCGCTCATCAATTCCGTACTCAGCTCGTCGCGATGTGGGGAAGCAAATCTTGGAGTTGGAGATAAGTTCTTTGATGATGAATCTCCCAGGAGTTTGCAGCTACCTGTGGGGATTCTCCGGTTCTCGAAGGACGGAAATGAGAAACCTGAGCCTCAATTGGCTGCTCTTGACGATTCTGCGTTGGTCGGCCTCTCAACTTCGCTTTTGCGAAGGCTTTCTATTACTTCAGGTTCGCTGGTGCTTGTCAAGAATGTTGAGATGAACTTACAGAGAATTGCACAGGCAATTGCACTAGATCCTCCAGGCAGCCATGAGTGCACATCTGATGTTAAATTGCCTTCTCCTCTGTCATCTCGGATAATGCTTGTATTTCCTACTTGTGCTTTCCCTCATAGTGATACGTCATTAGATCACAAAGTTGCTTATATATCTCCTCTCTTAGCTTTTAACCTCAATTTACACATAACTTGCTTAGAATCCATTCTACAGCAAGGCAAAGAGGTTTTAGCATCGTATTTCAAACCAGAATTGGATGATGAGGCTACTGCAAAAAGTACTGAGTCTTCTGTCATTAATATAGAACTGTTACCTTTTGATCAAGCCACTAAGTATGCGTCACATCTAAGGGTTTCTTTTGTGAAGATACCAGAATGTGGAACCCTTGAATCTCTTCAAAGAAGTTCACCTATTGAATCAGAAGAACGCCAAGATATGATTGATTTAGCATTACAAAAATATTTTGAAGTGGATAGATATCTGACAAAAGGAGATGTTTTTGGCATCAACATAAATTGGAGCTGCAATTCCATTATATGCATTCCATGCAACCGAAAATCACAAAAGAAAAATGACAATCTTATCTACTTCAAGGTCGTTGCTATGGAACCATCAGATGAACCAGTTCTTCAGGTGAATCGAACTTCAACTGCTCTGGTGCTTGGAGGGAGCTCCCCTTCTGCTCTTCCACCAGATTTGTTAATTGCTGGACCAAAAGAGCCTGTGCCTTTGCAAGGAGACACAGTAAAAATCTTGGCTTCAATACTTACACCACCTTTCTGTCCATCAGCACTTTCATCAAAATTCAGAGTTTCAGTTCTATTGTACGGCCTGGCAGGTTGTGGGAAGAGGACTGCTGTTAGATATGTTGCTGGTCGATTGGGCCTGCATGTGGTGGAATACAATTGTCATGATTTAACAGTGTCAGAAAGGAATATATCTGTGGCACTAGCTCAAGCTTTTAAGACAGCTCAAAGATACTTGCCAACCATACTTCTTCTCCGTCACTTTGAAGTTTTTCGAGATATGCAATCTCCTGAGGGTCCTTTAAATGATCAAAGAGGCAATACATCTGAAATTGCATCAATTATTAGGAAATTCACTGAGCCAACACGTAAAGATGGTGATATATACTCCCATGCAAAACCAAATGATGAATTTGTTGAGAAGAGTGCTGAAAAGACAAGTGGGCATCAGATCCTGTTGATTGCTGCTGCTGTGAGTTCAGAAGGTCTGCCTTCAACTATCAGACGCTGCTTCAGTCATGAAATAAATATGGGGCCTTTGACTGATGAGCAAAGAGCTGAAATGCTATCTCAGTCACTGGAAAGTGTTTCTGAGCTCCTCTCCAATACTGGTTCTGAAAGTTTCGTGAAAGAAATTGTTGGGCAGACATCTGGTTTCATGCCACGGGACATGCGTGCTTTGATTGCTGATGTTGGTGCCAACTTATTTCCCAAGAGTAATGCTGCAGCAGACAAAATTACACCTGACGATGTAGATGGTTCTCTTAGTTCCAAAGTAATGCAGGACAGCAACTACTGGAAAGTTTTGCCTCAGGTCCCTGGGAAAGAAGACTTGACAAAAGCATTGGAACGTTCAAAGAAAAGAAATGCTGCTGCTTTGGGTGCTCCAAAGGTTCCTAATGTGAAATGGGAAGATGTTGGTGGGCTTGAAGATGTGAAAAAATCAATCCTGGATACTGTTCAGTTGCCTCTCTTGCATAAGGATTTGTTTTCATCTGGACTACGTAAGCGGTCTGGTGTTCTTCTGTATGGTCCTCCTGGAACTGGCAAGACATTATTAGCCAAAGCTGTTGCCACTGAATGTTCCTTGAATTTTCTTAGTGTAAAAGGGCCTGAACTGATCAACATGTACATAGGAGAGTCTGAGAAGAATGTTCGAGATATTTTTCAGAAGGCCAGATCATCACGTCCATGTGTTATTTTCTTTGATGAGCTTGATTCTCTTGCTCCAGCTCGGGGTGCTTCTGGGGATTCTGGGGGTGTTATGGACAGAGTGGTTTCTCAGATGCTTGCAGAGATTGATGGCCTGAATGATTCTACACAGGACCTCTTTATCATTGGAGCAAGTAATAGGCCAGACTTGATAGACCCAGCACTTTTACGCCCTGGCAGATTTGATAAGCTGCTATATGTTGGAGTTAATTCTGATGCATCTTACCGGGAGCGGGTCCTTAAAGCACTTACCCGAAAGTTTAAATTGTCAGAAGATGTTTCACTTTACTCAATAGCCAAGAAGTGTCCTCCAAACTTCACTGGTGCAGACATGTATGCTTTGTGTGCAGATGCATGGTTTCTGGCTGCAAAGCGCACGGTTTTAAGTGCAGATCCAGAGTCTTCCTGCCAAGATGAAGAAGCAGACTCTGTTATTGTTGAATACAATGATTTTGTCCAGGTCTTGGGGGAGCTAACGCCTTCCCTGTCCATGGCTGAGCTTAAAAAGTACGAGCAACTAAGAGATCAGTTTGAAGGCACATCAAAATGA 2826 0.4271 MVGRRKPLVLASTKSLINSVLSSSRCGEANLGVGDKFFDDESPRSLQLPVGILRFSKDGNEKPEPQLAALDDSALVGLSTSLLRRLSITSGSLVLVKNVEMNLQRIAQAIALDPPGSHECTSDVKLPSPLSSRIMLVFPTCAFPHSDTSLDHKVAYISPLLAFNLNLHITCLESILQQGKEVLASYFKPELDDEATAKSTESSVINIELLPFDQATKYASHLRVSFVKIPECGTLESLQRSSPIESEERQDMIDLALQKYFEVDRYLTKGDVFGININWSCNSIICIPCNRKSQKKNDNLIYFKVVAMEPSDEPVLQVNRTSTALVLGGSSPSALPPDLLIAGPKEPVPLQGDTVKILASILTPPFCPSALSSKFRVSVLLYGLAGCGKRTAVRYVAGRLGLHVVEYNCHDLTVSERNISVALAQAFKTAQRYLPTILLLRHFEVFRDMQSPEGPLNDQRGNTSEIASIIRKFTEPTRKDGDIYSHAKPNDEFVEKSAEKTSGHQILLIAAAVSSEGLPSTIRRCFSHEINMGPLTDEQRAEMLSQSLESVSELLSNTGSESFVKEIVGQTSGFMPRDMRALIADVGANLFPKSNAAADKITPDDVDGSLSSKVMQDSNYWKVLPQVPGKEDLTKALERSKKRNAAALGAPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSSRPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLSEDVSLYSIAKKCPPNFTGADMYALCADAWFLAAKRTVLSADPESSCQDEEADSVIVEYNDFVQVLGELTPSLSMAELKKYEQLRDQFEGTSK 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3371 941 Pfam ATPase family associated with various cellular activities (AAA) 379 532 IPR003959 GO:0005524|GO:0016887
Dere01g3371 941 Pfam ATPase family associated with various cellular activities (AAA) 695 827 IPR003959 GO:0005524|GO:0016887
Dere01g3371 941 FunFam Peroxisomal biogenesis factor 6 653 842 - -
Dere01g3371 941 ProSitePatterns AAA-protein family signature. 798 816 IPR003960 GO:0005524|GO:0016887
Dere01g3371 941 Gene3D - 653 930 IPR027417 -
Dere01g3371 941 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 344 589 IPR027417 -
Dere01g3371 941 FunFam Peroxisome biogenesis protein 6 348 533 - -
Dere01g3371 941 FunFam Peroxisome biogenesis protein 6 829 915 - -
Dere01g3371 941 Gene3D - 346 556 IPR027417 -
Dere01g3371 941 PANTHER AAA-FAMILY ATPASE 71 938 - -
Dere01g3371 941 CDD RecA-like_PEX6_r2 667 826 IPR047533 -
Dere01g3371 941 SMART AAA_5 375 536 IPR003593 GO:0016887
Dere01g3371 941 SMART AAA_5 691 831 IPR003593 GO:0016887
Dere01g3371 941 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 654 935 IPR027417 -
Dere01g3371 941 Gene3D - 829 915 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3371 Dere-ChrDere01 48318897 48325359 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3371 661 900 Calmodulin-binding Proteins AT3G56690 38.589 8.63e-41 160