Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3370 ATGGAGTTGTACGGTAGGAACCCGGCGAGAAATGGGTCGCAACCGGGTAATCAATCCGAATGGCGCCCAGCAGGCGGCGAAACTGGACTTGAAGAATCGATGTGGCCCTTAACACTCGGTAGTAGCGAATTTTACCCGGAGCGACCCGGTGTACCCAATTGTGTGTATTACATGCGAACCGGGTTCTGTGGATATGGTAGCAGGTGCCGTTACAATCATCCTCGTGATCGTGCCGCGGTTGCAGCAGCTGTAAGAGCTACAGGGGAGTATCCAGAACGAGTAGGGGAACCTCCTTGTCAGTATTATTTAAAAACGGGAACCTGCAAATTTGGTGCATCCTGTAAATTCCACCATCCAAAACATGGAGGTGGATCTTTAAGTCAAGCTCCACTAAATATTTATGGATACCCGTTACGGCCGGGTGAGAAAGAATGCTCCTATTATTTGAAAACGGGGCAGTGCAAATTTGGTATAACTTGTAAATTCCATCATCCTCATCCAGCTGGCACATCAATGCCAGCATCTGCACCTCAGTTTTATCAACAGGTGCAATCTCCTACGGTCCCTCTGGCTGAACAGTATGGGGGGTCATCCACCAGCTTGAGATTGGCTAGGCCCTCAATATTGCCTGGTTCATATGTGCAAGGGGCTTATGGTCCTGTACTTCTTTCACCAGGGGTTGTTCCCTTTCCAGGATGGAGTCCTTATACGGCACCTTTAAGTCCTGTGTTATCTCCTGGTGCTCAATCTGCTGTTGGGGCTACTTCTCTGTATGGAGTGACCCAGTTGTCTTCATCGACAAGAGCTTTTGCCAGACCATATACTCCTCTGCCTTCTACTGCTGGCATTTCAGGCAGTAACCAGAAGGAACAAATATTTCCTGAAAGACCTGGTGAGCCTGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATATGGATTAGCATGTCGATATCATCATCCTAGGGACCGGACTGTGACACGGCCACTTCTCAGCCCCATTGGTCTCCCATTACGTCCGGGTGTACAACCTTGTGTTTTTTATTTGCAAAACGGGCATTGCAAGTTTGGCTCCACTTGCAAATTTGATCACCCTTTGGGGTCTGTGAGATACAGTCCATCAGCCTCTTCTCTCATTGATATGCCAGTAACTCCATACCCTGTTGGATCTTTGCTGTCTACCCTGGCCCCTTCAACATCTTCAGAGCTTCAGCCTGAACTGATGTCAGGCTCAAAAATGGAATCTTTTTCTACCAGAATGCCTTCCTCTGGAAACGGCTCAAGCAGTTCTGTTAATTTAATTTTCTCACAAGGTGGATCCGTCTCTCTTTCTGATGTGCAACTCTGA 1350 0.4785 MELYGRNPARNGSQPGNQSEWRPAGGETGLEESMWPLTLGSSEFYPERPGVPNCVYYMRTGFCGYGSRCRYNHPRDRAAVAAAVRATGEYPERVGEPPCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPHPAGTSMPASAPQFYQQVQSPTVPLAEQYGGSSTSLRLARPSILPGSYVQGAYGPVLLSPGVVPFPGWSPYTAPLSPVLSPGAQSAVGATSLYGVTQLSSSTRAFARPYTPLPSTAGISGSNQKEQIFPERPGEPECQYYLRTGDCKYGLACRYHHPRDRTVTRPLLSPIGLPLRPGVQPCVFYLQNGHCKFGSTCKFDHPLGSVRYSPSASSLIDMPVTPYPVGSLLSTLAPSTSSELQPELMSGSKMESFSTRMPSSGNGSSSSVNLIFSQGGSVSLSDVQL 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3370 449 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Dere01g3370 449 MobiDBLite consensus disorder prediction 1 27 - -
Dere01g3370 449 SUPERFAMILY CCCH zinc finger 300 325 IPR036855 GO:0046872
Dere01g3370 449 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Dere01g3370 449 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Dere01g3370 449 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Dere01g3370 449 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Dere01g3370 449 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 342 366 IPR000571 GO:0046872
Dere01g3370 449 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Dere01g3370 449 SUPERFAMILY CCCH zinc finger 342 371 IPR036855 GO:0046872
Dere01g3370 449 SUPERFAMILY CCCH zinc finger 96 120 IPR036855 GO:0046872
Dere01g3370 449 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Dere01g3370 449 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Dere01g3370 449 ProSiteProfiles Zinc finger C3H1-type profile. 340 368 IPR000571 GO:0046872
Dere01g3370 449 Gene3D - 90 177 - -
Dere01g3370 449 Gene3D - 43 89 - -
Dere01g3370 449 Gene3D - 295 377 - -
Dere01g3370 449 MobiDBLite consensus disorder prediction 407 431 - -
Dere01g3370 449 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Dere01g3370 449 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Dere01g3370 449 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Dere01g3370 449 SMART c3hfinal6 340 367 IPR000571 GO:0046872
Dere01g3370 449 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Dere01g3370 449 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Dere01g3370 449 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Dere01g3370 449 PANTHER PROTEIN PHOSPHATASE RELATED 26 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3370 Dere-ChrDere01 48303559 48308325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3370 1 419 C2H2 Transcription Factor Family AT5G18550 52.620 6.64e-140 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere01g3370 zf-CCCH 4.9e-08 CL0537