Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere01g3362 | ATGGAGGACTCTGCAACACAAACAAGAGAGCACTTTGGAAAGTTGCAGTATGGATGCGAACACTACAGGAGACGATGCAAAATTCGTGCCCCATGCTGTGATCAGATCTTCCCATGTCGCCACTGCCACAACGAGGCCATGAGCTCGCTTAGCAACCCCAAAGAGCGTCATGAACTTGTCAGACGTGATGTTAAGCAAGTTATATGTTCAGTTTGTGATGCCGAGCAGGAGGTTGCCAAGGTGTGTTCTAATTGTGGTGTCAACATGGGAGAATATTATTGCGAGATATGCAAATTTTATGACGATGATACAGATAAAGGGCAATTTCATTGTGATGAATGTGGTATTTGCAGGGTTGGTGGTCGTGATTACTTCTTTCATTGTCAGAAATGTGGATCTTGCTATGCAGTGAGCTTGCAAAACAATCACTTATGTGTTGAGAACTCAATGAAGAGTTACTGCCCCGTCTGTTATGAGTATCTATTTGATTCAATTAAAGGCACCACCATTATGAATTGTGGACACACAATGCATATGGAATGTTTTCGAGAGATGGCAACACAAAATCAGTACCGTTGTCCTATTTGCTTAAAGACTATATTCAATATGTCTGAGAATTGGAGACATTTAGATGAGGAGATTGAAGCTGTTCCTATGCCTCAGGAATATAAAATCGAGGTCTCAATTCTGTGCAATGATTGCAACACGACCAGTGTAGCTTCCTTTCACATTTTAGGTCACAAGTGCAGACACTGCAGTTCGTATAACACTCGTAGGATTTCAACACCAGAACAACGATAA | 801 | 0.417 | MEDSATQTREHFGKLQYGCEHYRRRCKIRAPCCDQIFPCRHCHNEAMSSLSNPKERHELVRRDVKQVICSVCDAEQEVAKVCSNCGVNMGEYYCEICKFYDDDTDKGQFHCDECGICRVGGRDYFFHCQKCGSCYAVSLQNNHLCVENSMKSYCPVCYEYLFDSIKGTTIMNCGHTMHMECFREMATQNQYRCPICLKTIFNMSENWRHLDEEIEAVPMPQEYKIEVSILCNDCNTTSVASFHILGHKCRHCSSYNTRRISTPEQR | 266 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere01g3362 | 266 | SUPERFAMILY | Zinc hairpin stack | 90 | 147 | IPR037275 | - | |
| Dere01g3362 | 266 | ProSiteProfiles | Zinc finger RING-type profile. | 154 | 196 | IPR001841 | - | |
| Dere01g3362 | 266 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 8 | 265 | - | - | |
| Dere01g3362 | 266 | ProSiteProfiles | Zinc finger CTCHY-type profile. | 89 | 153 | IPR017921 | - | |
| Dere01g3362 | 266 | ProSiteProfiles | Zinc finger CHY-type profile. | 12 | 87 | IPR008913 | GO:0008270 | |
| Dere01g3362 | 266 | SUPERFAMILY | RING/U-box | 153 | 203 | - | - | |
| Dere01g3362 | 266 | Gene3D | - | 224 | 265 | - | - | |
| Dere01g3362 | 266 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 149 | 217 | IPR013083 | - | |
| Dere01g3362 | 266 | SMART | ring_2 | 154 | 196 | IPR001841 | - | |
| Dere01g3362 | 266 | Pfam | Zinc-ribbon | 201 | 258 | IPR039512 | - | |
| Dere01g3362 | 266 | Pfam | CHY zinc finger | 19 | 99 | IPR008913 | GO:0008270 | |
| Dere01g3362 | 266 | SUPERFAMILY | CHY zinc finger-like | 15 | 88 | IPR037274 | GO:0008270 | |
| Dere01g3362 | 266 | Pfam | Ring finger domain | 153 | 196 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere01g3362 | Dere-ChrDere01 | 48231461 | 48234856 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere01g3362 | 17 | 262 | C2H2 Transcription Factor Family | AT3G18290 | 41.897 | 3.60e-55 | 189 |