Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3361 ATGAGTGATTCTCCGAAACGCCCGCGTCCTTCGGATAAGGATCAAGCACCACAAGTTCACAGACCATGTGACTACTGCGGCGACTCCACAGCTCTGCTCTACTGCCGAGCTGATTCTGCGAAACTCTGTTTCTCTTGTGATCGTGAAGTTCACTCTACTAACCAACTTTTCTCGAAGCACACTCGCACTTTGCTCTGTGATGCCTGCGACGTATCACCTGCCACAATACTCTGTTCTACCGAAAGCTCCGTTTTCTGCCAGAATTGTGACTGGGAACGGCACAACCTTTCGCTATCTTCGGTACATGACAGGAGGCCACTCGAGGGCTTCACTGGGTGCCCTTCTGTGACTGAGTTGTTAACGATTCTGGGTTTTGAAGATTTGGGCAAGAAAGCCCTGTTTTCGACTGAGGATTGTGGGGGATGTGGCGGTGGTAGTGGTGACGGGTTTGTGGGATCTGAGCTTGAGGAGGGTCTTTCGGATTTGTTTGTATGGGATGCTCCTGCAGTTGTTAGCCTCGACGATTTGATAACTTCTACAAGTTCATCTCATAATTATCAGGCCATGGAGGTTCCTCCTCTGCCTAAGAACCGAAAGGCTGCTTGTGGGCAACACAAGGAAGACATCATTAGTCAGCTTCGTGAGCTTGCTAAGTCGGAGCCCAACTTGAATTTTGGAGATGTAGGTACTGAACGATTGAGCACCATGCACCCCTTAGTTTCTGAACAATGTTTGCAGTCAGCAAGTTTGTCCACAGGTTTTGAACATGACTACGAGGCTGATATTCTTCCTTCGAGTGAGGCGGGTGTTTTTGAGTGGCCTAGAGATGGGAGTGAAACTGCAAATCAAGTTGTTCCTCCTAATACATCGTTGGAAACTTATAAAGAGGAAGTTCACGATACACATTCAATTTCTGCTATCTCTGGAAGTCACACCTTTGGTAACAATGGCGGGCAACTGCCAAATTCTCTTAAATTCGAAAACTTATCTACAGCTCCTAAAGTTGCTCCATATGAGCTAACAAGTCAAGAAAGAGACTCTGCATTATTACGATACAAGGAGAAGAAGAAAACAAGAAGATATGACAAGCACATTAGGTATGAATCACGAAAAGTTCGGGCAGAAAGCAGGGCCAGGATTAAGGGTCGCTTTGCTAAGATGGAACACTGA 1170 0.465 MSDSPKRPRPSDKDQAPQVHRPCDYCGDSTALLYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDACDVSPATILCSTESSVFCQNCDWERHNLSLSSVHDRRPLEGFTGCPSVTELLTILGFEDLGKKALFSTEDCGGCGGGSGDGFVGSELEEGLSDLFVWDAPAVVSLDDLITSTSSSHNYQAMEVPPLPKNRKAACGQHKEDIISQLRELAKSEPNLNFGDVGTERLSTMHPLVSEQCLQSASLSTGFEHDYEADILPSSEAGVFEWPRDGSETANQVVPPNTSLETYKEEVHDTHSISAISGSHTFGNNGGQLPNSLKFENLSTAPKVAPYELTSQERDSALLRYKEKKKTRRYDKHIRYESRKVRAESRARIKGRFAKMEH 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3361 389 CDD Bbox1_BBX-like 65 107 - -
Dere01g3361 389 MobiDBLite consensus disorder prediction 1 20 - -
Dere01g3361 389 ProSiteProfiles Zinc finger B-box type profile. 18 65 IPR000315 GO:0008270
Dere01g3361 389 Pfam B-box zinc finger 21 63 IPR000315 GO:0008270
Dere01g3361 389 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 22 387 - -
Dere01g3361 389 Pfam CCT motif 345 387 IPR010402 GO:0005515
Dere01g3361 389 CDD Bbox1_BBX-like 22 65 - -
Dere01g3361 389 ProSiteProfiles Zinc finger B-box type profile. 61 107 IPR000315 GO:0008270
Dere01g3361 389 ProSiteProfiles CCT domain profile. 345 387 IPR010402 GO:0005515
Dere01g3361 389 SMART bboxneu5 66 107 IPR000315 GO:0008270
Dere01g3361 389 SMART bboxneu5 18 65 IPR000315 GO:0008270
Dere01g3361 389 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3361 Dere-ChrDere01 48227134 48229316 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3361 12 360 C2C2-CO-like Transcription Factor Family AT2G47890 38.375 5.83e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Dere01g3361 CCT 1.8e-15 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3361 01 48227134 48229316 Dere01g3361 01 48227134 48229316 ECH