Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3352 ATGATTTCTTTAGGGACCCCACTAATGCTTTTTGAAAACCATCACTGCCGTTCAACTGGATCCAACGGTCCAAATGTTGTGTTAAAAGATGCTTCCCTTAGATCGGACGGTCCAGATAAAGGTTTGGGTGACCTTGTCTTCCATTCAAAGCCCTTCCTCTTCCTTTCTCTCGAAGCTGGAGCCCTACGGCCATACGTGATGCGAAAGGAGTTTTTGATCAAACCAAATGATTTTGATCGCCTGAATCTTGGACTGCGATTATGCTTCGCAAAATTCGAGGATGAACGTGTTGTCATGGCGTCTATATTGAACTCTATACTCATGAGAGTGGAGAGATTTGGGTCCGCAGATGATGCTTCTGTAGATTCCATCACTCTATTTGTACTTCTCCTTGTTGCGTGTGTTGTAATTGGACACCTTCTGGAAAAGAGCCGATGGATGACTGAGTCAGTCATTGCACTATTCATTGGACTTTTAACTGGAACCATCATTCTACTAACAACTGGGGGAAAAAGTTCACACATCTTAGTATTTAATGAAGAACTCTTTTTCATATATCTTCTTCCACCCATTATATTTAATGCCGGGTTCCAGGTGAAAAAGAAGCAATTTTTTCGGAACTTCATGGCAATAGTTTTGTATGGTGTTGTTGGGAGTATAATATCATTTCTCATTATTTCACTGGGTTCAATTCAGCTATTCAAACAATGGGACATCGGGCTGGACTTGGGAGATTATTTTGCACTTGGAGCAGTATTTTCAGCCACAGATTCAGTCTGCACATTGCAGGTGCTCAATCAGGAAGAGACGCCACTTCTGTACAGTCTAGTTTTTGGTGAAGGTGTTGTCAACGATGCAACATCAGTGGTTCTTTTCAATGCAATCCAGAAATTTGACCTCTCTCACATCACCTCAGCCAATATCATGCAGTTTGTTGGCAATTTTTTATATTTATTCCTGACAAGCACTTTGCTGGGAGTAGCAGTTGGCTTGCTTAGCGCATACATTATAAAGAAGTTGTGTTTGTCCAGGCATTCCACTGATCGAGAAATTGCGCTTATGATCCTGATGGCTTATTTTTCATATATGTTGGCTGAACTTCTTGATTTAAGTGGGATCCTTACTGTGTTCTTTTGTGGGATTGTGATGTCGCACTACACTTGGCATAATGTCTCTGAGAATTCTAGAGTCACAAGCAGGCATGCTTTTGCCACTTTCTCCTTTGTCTCTGAGATCTTTATCTTCTTATACGTTGGCATGGATGCCTTGGACATTGAGAAGTGGAAATCTGCCAGCAACAGTCCTTCGACATTAGTTGGGGCAAGTGGAATGCTGCTTGGCCTGGTTCTGCTTGGAAGGGCAGCTTTTGTTTTCCCTCTATCACTGATTGCCAATTTATTTAGGAAGTCTAACCATGATAAAATTGCATTCAAGCAGCAGGTTGTAATATGGTGGGCTGGGCTTATGCGAGGTGCTGTATCTGTGGCACTTGCATATAATAAGTTTACTAGATCAGGACATACTCAACTGCAAGGGAATGCCATCATGATTACAAGCACCATCATAGTTGTTCTCTTAACTAATGTGGTGGGTGGATTACTGACTAAGCCTCTGATAAGGTTATTGCTGAATCCCCACAAACATTCAGGCAGCTCAATGACTTCAGACTTTCCATCTAGTAAGGATTTGTCTCTGCCGTTACTCTTCAACGGGCAAGACTCGGAATCTACAATGGACACCAGGAATCCCCTTGATTCCAATCACACTGTTCATTACTATTGGCGAATCTTTGATAATTCATTCATGCGCCCTGTTTTTGGCGGGAGAGGATTTGTTCCTGTTGCTCCTGATTCAAGAACAGAGATGACTCTGCAGTAG 1878 0.4217 MISLGTPLMLFENHHCRSTGSNGPNVVLKDASLRSDGPDKGLGDLVFHSKPFLFLSLEAGALRPYVMRKEFLIKPNDFDRLNLGLRLCFAKFEDERVVMASILNSILMRVERFGSADDASVDSITLFVLLLVACVVIGHLLEKSRWMTESVIALFIGLLTGTIILLTTGGKSSHILVFNEELFFIYLLPPIIFNAGFQVKKKQFFRNFMAIVLYGVVGSIISFLIISLGSIQLFKQWDIGLDLGDYFALGAVFSATDSVCTLQVLNQEETPLLYSLVFGEGVVNDATSVVLFNAIQKFDLSHITSANIMQFVGNFLYLFLTSTLLGVAVGLLSAYIIKKLCLSRHSTDREIALMILMAYFSYMLAELLDLSGILTVFFCGIVMSHYTWHNVSENSRVTSRHAFATFSFVSEIFIFLYVGMDALDIEKWKSASNSPSTLVGASGMLLGLVLLGRAAFVFPLSLIANLFRKSNHDKIAFKQQVVIWWAGLMRGAVSVALAYNKFTRSGHTQLQGNAIMITSTIIVVLLTNVVGGLLTKPLIRLLLNPHKHSGSSMTSDFPSSKDLSLPLLFNGQDSESTMDTRNPLDSNHTVHYYWRIFDNSFMRPVFGGRGFVPVAPDSRTEMTLQ 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3352 625 Pfam Sodium/hydrogen exchanger family 127 539 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Dere01g3352 625 PRINTS Na+/H+ exchanger signature 211 219 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Dere01g3352 625 PRINTS Na+/H+ exchanger signature 182 193 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Dere01g3352 625 PRINTS Na+/H+ exchanger signature 250 260 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Dere01g3352 625 PRINTS Na+/H+ exchanger signature 196 210 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Dere01g3352 625 NCBIfam sodium/hydrogen exchanger 3 124 546 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Dere01g3352 625 Gene3D - 121 544 IPR038770 -
Dere01g3352 625 PANTHER SODIUM/HYDROGEN EXCHANGER 115 606 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3352 Dere-ChrDere01 48157682 48164163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3352 101 621 Antiporters AT3G05030 66.294 0.0 707