Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3324 ATGAAGGAGAAGGCACATTCCCCAGTTGGGGTTCTTGAGGACTACTTTAGGAGCTCTGAGTCAGACTCAAGTTCTTCCAAAGAACCCACCGTAGATTGTGAGGCTCAATATAAGTCAAAACTTGCTTCTAAATGGCTTGGATTTCTCCGACTTCTGAGGACCAGATCCAAAAACCCCATACCCACCTTGCATCCTCGCAGTGTCCTCAATCTCTCCAAGAGAATGAGCAGAAGCATGAGAGAGACCATTTTTCCGAATTCTCGCTTAGGTGCAGACTCTTCCCTCCATAATTCACCATGGAAGATCTTCACTCACAATGAAATTCTACTTGCAACCAATTCTCTCAGTCAAGATAACCTAATTGGGAAAGGTGGGTATGCTGAAGTTTACAAAGGGTGCCTGCCAAATGGTCAGCTAGTAGCAATTAAAAAACTGACACGTGGAACCCCAGATGATATTATAGGTGACTTCTTATCAGAGCTTGGCATAATGGCACATGTCAACCATCCCAATACTGCTAAACTAGTTGGCTATGGCGTTGAAGGAGGAATGCACCTTGTTCTTGAATTGTCTGAAAAAGGAAGCTTAGCTTCAGTGCTTCACGGTACGAAGGAAATACTGCCATGGTGCATTAGGTATAAAATTGCTTTAGGAATAGCGGAGGGTATATTATATCTGCATGAGGGTTGCCAAAGAAGAATCATCCACAGAGATATAAAGGCAGCGAATATCTTGCTTACAGAGGACTACGAGCCTCAGATTTGTGATTATGGACTAGCAAAATGGCTGCCGGAGAATTGGACTCATCACATCGTTTCAAAATTTGAAGGAACCTTTGGCTATCTTGCTCCTGAATACTTGCTTCATGGCATAGTAGACGAGAAAACAGATGTATTTGCTTTTGGTGTTCTGCTATTAGAATTAGTCACTGGACGACGAGCGCTTGATTATTCACAGCAAAGCCTTGTTTTGTGGGCAAAACCAATGCTGAAAAAGAATAATATCAGGGAGCTGATTGATCCATCACTAGGTGAGGACTTGGATTCTCGGCAGATAAATCTTGTGCTCTTGGTTGCTTCTTTATGCATACACCAATCCTCAATTCGCAGACCCTCCATGAGACAGGTTGTGCAGCTTCTGAATGGCAATCTTAGCTGCTTTAAGAGCATGAAGAAAACTCGATTGCCATTTTTCCGAAAGCTCTTCCAGGAGGAGCTACTTGATTCTGAGTAG 1233 0.4315 MKEKAHSPVGVLEDYFRSSESDSSSSKEPTVDCEAQYKSKLASKWLGFLRLLRTRSKNPIPTLHPRSVLNLSKRMSRSMRETIFPNSRLGADSSLHNSPWKIFTHNEILLATNSLSQDNLIGKGGYAEVYKGCLPNGQLVAIKKLTRGTPDDIIGDFLSELGIMAHVNHPNTAKLVGYGVEGGMHLVLELSEKGSLASVLHGTKEILPWCIRYKIALGIAEGILYLHEGCQRRIIHRDIKAANILLTEDYEPQICDYGLAKWLPENWTHHIVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVTGRRALDYSQQSLVLWAKPMLKKNNIRELIDPSLGEDLDSRQINLVLLVASLCIHQSSIRRPSMRQVVQLLNGNLSCFKSMKKTRLPFFRKLFQEELLDSE 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3324 410 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 192 394 - -
Dere01g3324 410 Gene3D Phosphorylase Kinase; domain 1 87 189 - -
Dere01g3324 410 ProSitePatterns Protein kinases ATP-binding region signature. 121 144 IPR017441 GO:0005524
Dere01g3324 410 SMART serkin_6 115 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3324 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Dere01g3324 410 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 86 189 - -
Dere01g3324 410 ProSiteProfiles Protein kinase domain profile. 115 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3324 410 MobiDBLite consensus disorder prediction 17 32 - -
Dere01g3324 410 Pfam Protein kinase domain 117 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3324 410 MobiDBLite consensus disorder prediction 1 32 - -
Dere01g3324 410 SUPERFAMILY Protein kinase-like (PK-like) 95 380 IPR011009 -
Dere01g3324 410 Gene3D Transferase(Phosphotransferase) domain 1 192 395 - -
Dere01g3324 410 PANTHER OS08G0249100 PROTEIN 6 406 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3324 Dere-ChrDere01 47958202 47959966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3324 102 376 Trihelix Transcription Factor Family AT1G68690 40.909 1.29e-66 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Dere01g3324 Pkinase 1.5e-41 CL0016