LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere01g3323	ATGTTTCTCTTCTTCTTCTTCTTTGTTTTCCTTACTTTCCCCCTTTCTTCCTTCTCTGCAAACGACACGCTTCTTACCGCTCCCTGCCCCCTTAACTTCACCGTCCTCACCGTCCCCGGCGGCGGCTCCCCACCTTCCTTCGACTCCAAAACCGTCTGCCAGTTCACCCGCCTAGCCCTCCGTCTCGTTGAGTCCGATTACCTCCGTCGCACCGGCTTCTTTCTTCCACCTCTGAACTCTTCCGAAACCTGCTGGAATGATTTCCAGTCATTCATCAAACAGTACGACTCCAACTTGGACGTTCGCTCCGCTTGCGGCTTCCAAACAACCTGGATCTCCCAGGGATGCATGAACATAACCACTAAACAAGAATTCGAATCCCACGTTGCCAACTCTACTCTTCAGGATGTGCGGGGGAATTGCAATCAATCGCTCGAGAATAACTCTCCTTGCGCCATCTGTACTACGAGCTTATCAAATTTGCAAGCCTCGTACCTCACGGGACCGTCGGTTGGAAACGTCTCCGATTGTACGGCCTATCCCTCAATTTACGCCGCTGCCTTAGCAAACCAGGGCGGACCCACCGACAGAGGCACTGCCACGTGCTTGTTCTCTCTGACTTTCAAGTCGGCCGCTTCCAACGGTAATAAACGAACGGTTGTTATTGTGGTTGTTGTAATTGTTTGTGTATTGGCTTTGTCGCTAGTAATTGCTGGGATTTGGATGTATCGGAGATTGAATGTGAAGGACAAGAAGAGTATTAGTAAAACTGAGAAGGGTGTGATTTCTGCGTTGGATTCTATTAACGAGAGCACTACTCTGATTAGGTTCACGTTTGATGACATTAAGAAGGCAACTAGGAACTTTTCTAGGGACAATATAATAGGGAGAGGAGGATATGGGAATGTGTATAAAGGGGTGCTCCCGGATGGAACTGAAGTTGCATTGAAAAGGTTCAAGAATTGTTCTGCTGCAGGAGATGCAAGTTTCACTCATGAAGTTGAGGTTATTGCAAGCGTTAGGCATGTCAATCTGGTTGCTCTGAGGGGTTATTGTACTGCCACAACTCACTTAGAGGGTCACCAGAGGATTATCGTTTGTGATTTGATGAAGAATGGGAGTCTTCATGATCATTTATATGCGACTGTAGGAAAGAAACTCAGTTGGCCAGTCCGTCAACAGATTGCACTAGGCACTGCAAGGGGATTAGCTTATTTGCATTATGGGGCTCAACCTTCCATCATCCATAGGGATATTAAAGCCAGTAATATACTTCTGGATGAGAAGTTTGAAGCTAAAGTAGCAGACTTTGGACTTGCAAAGTTCAACCCCGAGGGAATGACTCATATGAGCACGAGGGTTGCTGGAACAATGGGGTATGTAGCTCCAGAATACGCATTGTACGGGCAATTGACAGAAAGAAGTGATGTCTTCAGTTTTGGTGTTGTGCTTCTTGAGCTTTTGAGTGGGAAGAAGGCCCTTCAAATGAACGACGATGGCCAACCCACTGCCCTGAACGACTTGGCTTGGTCATTGGTTAGAACAGGTAGCGCTTTGGATGTTATTGAAGATGGTATGCCAGAAGCGGGTCCACCAGAAGTGCTTGAGAAGTACGTGTTAATTGCTGTGCTTTGTTCTCACCCACAGTTATACGCTAGGCCTACAATGGACCAGGTTGTGAAAATGTTGGAGACTGATCAATCAGTACCTTCAATACCCGAACGGCCAATTCCTCTCGTTGCTGGAAGGATTGATATTGAGAGATCAGTGGGTAGCTTTGGCTCTGGTCAGCTCTCTAGTCCAACAGGTTATCAAACATATGCCTTTGAAAGCGACTGCCGTTCTTCTAATTCTAAGGAAGAAGAAGGAAGTTCAGGCTCCAGAATACTTAGTACAGATTGA	1902	0.4685	MFLFFFFFVFLTFPLSSFSANDTLLTAPCPLNFTVLTVPGGGSPPSFDSKTVCQFTRLALRLVESDYLRRTGFFLPPLNSSETCWNDFQSFIKQYDSNLDVRSACGFQTTWISQGCMNITTKQEFESHVANSTLQDVRGNCNQSLENNSPCAICTTSLSNLQASYLTGPSVGNVSDCTAYPSIYAAALANQGGPTDRGTATCLFSLTFKSAASNGNKRTVVIVVVVIVCVLALSLVIAGIWMYRRLNVKDKKSISKTEKGVISALDSINESTTLIRFTFDDIKKATRNFSRDNIIGRGGYGNVYKGVLPDGTEVALKRFKNCSAAGDASFTHEVEVIASVRHVNLVALRGYCTATTHLEGHQRIIVCDLMKNGSLHDHLYATVGKKLSWPVRQQIALGTARGLAYLHYGAQPSIIHRDIKASNILLDEKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGKKALQMNDDGQPTALNDLAWSLVRTGSALDVIEDGMPEAGPPEVLEKYVLIAVLCSHPQLYARPTMDQVVKMLETDQSVPSIPERPIPLVAGRIDIERSVGSFGSGQLSSPTGYQTYAFESDCRSSNSKEEEGSSGSRILSTD	633

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere01g3323	633	FunFam	probable LRR receptor-like serine/threonine-protein kinase RKF3	250	368	-	-
	Dere01g3323	633	SMART	serkin_6	289	563	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere01g3323	633	CDD	STKc_IRAK	295	564	-	-
	Dere01g3323	633	FunFam	probable LRR receptor-like serine/threonine-protein kinase RKF3	370	571	-	-
	Dere01g3323	633	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	83	620	-	-
	Dere01g3323	633	ProSitePatterns	Protein kinases ATP-binding region signature.	295	317	IPR017441	GO:0005524
	Dere01g3323	633	Gene3D	Transferase(Phosphotransferase) domain 1	370	571	-	-
	Dere01g3323	633	SUPERFAMILY	Protein kinase-like (PK-like)	265	564	IPR011009	-
	Dere01g3323	633	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	414	426	IPR008271	GO:0004672\|GO:0006468
	Dere01g3323	633	MobiDBLite	consensus disorder prediction	609	633	-	-
	Dere01g3323	633	Gene3D	Phosphorylase Kinase; domain 1	249	368	-	-
	Dere01g3323	633	ProSiteProfiles	Protein kinase domain profile.	289	572	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere01g3323	633	Pfam	Protein tyrosine and serine/threonine kinase	292	563	IPR001245	GO:0004672\|GO:0006468
	Dere01g3323	633	Pfam	SPARK	27	174	IPR043891	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere01g3323	Dere-ChrDere01	47950296	47952197	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere01g3323	7	618	Receptor kinase-like Gene Family	AT2G48010	64.935	0.0	788

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RKF3	Dere01g3323		PK_Tyr_Ser-Thr	9.3e-43	CL0016