Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3311 ATGATGGACTTTTTCTATTTGCTTGACTTGTATAAAGGGTGGTTGACTCTTTACAGACACAAGTGCTCGGCATGCTATAGGCAATATAAGAAAAAGGAGCATCTCATTGAGCACATGAAAATCTCATATCACTCAGTACATCAGCCTAAATGTGGGGCCTGTCAAAAGCGCTGCAAATCTTTTGAATCTCTGAGGGAACACCTTACTGGTTGGTCATCATTGCATATTCAATCTGATGTTGGTCCATTGCCAAAAGGAAACTGTTCCAAGGTCTTCTCTCAACATGGTTGTCAACTTTGCTTAAAATTAGTTGATAGCCCCAGATCTCTCATTGAGCATAACGAAACATGTTATCTATCTGCACCAACTCCTCTGGGAACAGGGGCATTGCCCTATATAAGATCCCAAATTCATCTTCCAGAGTCTCTTGTTGAAACCCACACCGGCAGACACCCTGGAGCAGTTGCAATTGATTGTGAAATGGTTGGTGGTGGAAGTGATGGATCCCTAGACCTTTGTGCTAGAGTATGCCTGGTTGATGAAGATGAGAATATAATTTTCCACACCTATGTACAGCCTCAAATCCCAGTCACTAACTATAGATATGATATAACCGGGTTGACAGAAGAGCATCTTAGAGATGCCATGCCACTTAAGGAAGTTCAAGACAAGGTATTGCAAATTCTGTACAATGGAGAGTCCATTGGCAAAGTTAGATTGGATGGTGGAAAGGCCAAGCTTCTTGTGGGGCATGACGTAGAACATGATTTGGACTGCCTGAAATTGAATTATCCTGATCACATGTTGAGGGACACTGCAAAGTATCGTCCATTGATGAAAACAAACTTGGTCAGCCATTCGCTTAAGTACCTTACAAGAACATATTTAGGTTATGACATCCAGTCAGGCACACATGACCCATATGAAGACTGTGTTTCCGTCATGAGGCTGTACAAGAGAATTCGGGCCCAAGTACATAGGGAGGAAGGCTCTGGTACATTTACTATAAGTAGCGTCACTGGCATTTCTGATTTTTGGAGATCCAAGGAACTTGAGAACTCCACACCTGATGAACTCTTTGCCATGTCGAAATCAGACTATAAGTGTTGGTGTTTGGATTTAATTTAG 1128 0.4211 MMDFFYLLDLYKGWLTLYRHKCSACYRQYKKKEHLIEHMKISYHSVHQPKCGACQKRCKSFESLREHLTGWSSLHIQSDVGPLPKGNCSKVFSQHGCQLCLKLVDSPRSLIEHNETCYLSAPTPLGTGALPYIRSQIHLPESLVETHTGRHPGAVAIDCEMVGGGSDGSLDLCARVCLVDEDENIIFHTYVQPQIPVTNYRYDITGLTEEHLRDAMPLKEVQDKVLQILYNGESIGKVRLDGGKAKLLVGHDVEHDLDCLKLNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGTHDPYEDCVSVMRLYKRIRAQVHREEGSGTFTISSVTGISDFWRSKELENSTPDELFAMSKSDYKCWCLDLI 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3311 375 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 23 328 IPR047021 GO:0004527
Dere01g3311 375 SMART c2h2final6 20 44 IPR013087 -
Dere01g3311 375 SMART c2h2final6 49 75 IPR013087 -
Dere01g3311 375 Gene3D - 151 333 IPR036397 GO:0003676
Dere01g3311 375 SUPERFAMILY Ribonuclease H-like 155 321 IPR012337 -
Dere01g3311 375 Pfam Exonuclease 155 318 IPR013520 -
Dere01g3311 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 20 49 IPR013087 -
Dere01g3311 375 CDD REX4_like 155 319 IPR037431 GO:0006364|GO:0008408
Dere01g3311 375 ProSitePatterns Zinc finger C2H2 type domain signature. 22 44 IPR013087 -
Dere01g3311 375 SMART exoiiiendus 153 327 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3311 Dere-ChrDere01 47860087 47862648 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3311 19 373 C2H2 Transcription Factor Family AT3G27970 52.394 2.26e-137 394