Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3301 ATGACAATCTCAATGGTAATGTGCAGACCAACACAGCCACTGGTAAATATTTCTTCCGGTGGCCCAAAAACAAAGGTGTCCACTCTTCCACGGCAGAAGGAGAAGGTTGTGTTGGTCATGGGAGCCACGGGCACCGGAAAGTCGAGGCTCTCCATCGACCTTGCCACCCGATTTTCAGCTGAGATCATCAACTCCGACAAAATGCAAGTCTACGAAGGACTCGACATAGTGACAAACAAGATCACCATGGAAGAACAACGTGGTGTTCCTCACCATTTGCTAGGAACACAGAATCCCAATTCAGAATTCACCGCGAGAAATTTCTGTGACGTGGCTTCACTTGCCATTGAGACAATTACGGGTCGTGGAAATCTTCCGATAATAGTCGGAGGCTCCAACTCGTATGTCGAGGCTTTAATCGACGACGACGACTATAAATTTCGATCAAGGTACGATTTCTGTTGTCTCTGGGTAGACGTTTCGATGCCCGTTCTTCGCTCGTACGTGGCAGAACGGGTCGATCAAATGTTGGAGAACGGAATGGTGAACGAATTAAGGCCATTTTTCAATCCAAAAGGGGACTATTCACGAGGGATTAGAAAAGCAATTGGAGTTCCGGAATTTCATAAGTACTTTCGAAACGAAGCATCTGCAGACGAAGAAATGAGGCAGAGGTTGTTGAAAGAAGCCATGAGGGAAATGAAGGAGAACACATGGAAGTTGGCGGGAAAACAACTGGGGAAGATTCAGAGCCTCCGGAATGCAAAGAGATGGAAGATGCATCGCGTGGATGCGACGCCGGTGTTCCGGAAGCGTGGGGAAGAAGCAGAGGCGAATAAGGCGTGGAAGAAGGTGGTGGCGGAGCCAAGTGCTATGATCGTCGCTCAGTTTCTTCACAATTTCACAACAAGTAGTTCCAATAATAGTAATGTGTCCGGTGGGATTAGATTGGCATCCCTCGAGACTGCCATTGCTTCGGCTGCTCATGCTCAATCCATGGCGGCACAATCGTGCCCTGTGTAA 1023 0.4839 MTISMVMCRPTQPLVNISSGGPKTKVSTLPRQKEKVVLVMGATGTGKSRLSIDLATRFSAEIINSDKMQVYEGLDIVTNKITMEEQRGVPHHLLGTQNPNSEFTARNFCDVASLAIETITGRGNLPIIVGGSNSYVEALIDDDDYKFRSRYDFCCLWVDVSMPVLRSYVAERVDQMLENGMVNELRPFFNPKGDYSRGIRKAIGVPEFHKYFRNEASADEEMRQRLLKEAMREMKENTWKLAGKQLGKIQSLRNAKRWKMHRVDATPVFRKRGEEAEANKAWKKVVAEPSAMIVAQFLHNFTTSSSNNSNVSGGIRLASLETAIASAAHAQSMAAQSCPV 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3301 340 FunFam Adenylate isopentenyltransferase 5, chloroplastic 162 260 - -
Dere01g3301 340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 143 IPR027417 -
Dere01g3301 340 Gene3D - 33 298 IPR027417 -
Dere01g3301 340 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 33 298 IPR039657 -
Dere01g3301 340 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 162 260 - -
Dere01g3301 340 Pfam IPP transferase 147 246 - -
Dere01g3301 340 Pfam IPP transferase 69 142 - -
Dere01g3301 340 FunFam Adenylate isopentenyltransferase 5, chloroplastic 33 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3301 Dere-ChrDere01 47756088 47757110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3301 149 307 C2H2 Transcription Factor Family AT2G27760 29.032 8.19e-20 88.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3301 01 47756088 47757110 Dere02g0665 02 6254352 6255308 CCT
Dere01g3301 01 47756088 47757110 Dere01g3301 01 47756088 47757110 ECH