Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3300 ATGGAAAGACAAAGTAACCAAGAGAACCCCCCAAAGATGATGTCGTTTATCTCTGGCGGAAGTAGTAATCATGTGTGTCATTCAGGTGAGGATGTTGCTGCTGCTGGTGGAAAGAATGGGAATGGGAGCGAGTGGACTTGCCTCCCAGAACCATTTTATAATTATGTTGAGTATCTCACAGAAGCCTCAACATATCTGCCAAATACTACAGCCGAATATGTGCCTGGGAGCTGTTATCCTCCTGTTAGCAGCTTACACAATGCTAATGGAGTCAAAAGAGCAGACAGAAACTTTTTTAACAATGATCCAGGAAAAGCATGCGTTTTTAAACCTGCTGATTCTTCTGCCGGCATAGATTTTAGGAAGGTGGGGTTTTGGAGGCCAGATAATGAAGGCCACCTAGCGAAGAAATTTGCTAACCAACATGATCTTCGTGCTGAGAGTCAAACTTCGTGGAAAGCAGAATCAACTGGAGATATACATTCTGTTTCAAAACTTGATCCAAGGTTAACAGTTGGTGCACCTGGTTTCCTTCCCAAACCACGATGCAGTTCATCAAGACAGAAAGCCAGTGCCGCTGACCGTCAACGCAGGCAACGTATTACTGATAACCTTAAAGCCTTGCACGACTTGCTACCAACTCCAGTAGAGGGTAGTCCGGCATATATACTAGATGATATCATTGACTATGTCAAATATTTGCAGCTTCAGATAAAGGAATTAAGTGGAAGCAGATTGCAAGGAGAATCAACTGCTATGCCACTCACTTTCCGTGAGGGTTACGGCCATTATAGTAACCAACAGATGCTAAATGAACCTCTCGAGGAGATGGTCGGAAAACTAGTTGAGGAACATCCAGCAGCAGCAGCCCAGCTGTTAGAGAGTAAGGGCCTTTTTCTGCTGCCTATGGCTTTGGTTGAAGACATACGCCAAGCTATGCAGATGTTTGGCGGGATTCCACGTGTCTAA 969 0.4469 MERQSNQENPPKMMSFISGGSSNHVCHSGEDVAAAGGKNGNGSEWTCLPEPFYNYVEYLTEASTYLPNTTAEYVPGSCYPPVSSLHNANGVKRADRNFFNNDPGKACVFKPADSSAGIDFRKVGFWRPDNEGHLAKKFANQHDLRAESQTSWKAESTGDIHSVSKLDPRLTVGAPGFLPKPRCSSSRQKASAADRQRRQRITDNLKALHDLLPTPVEGSPAYILDDIIDYVKYLQLQIKELSGSRLQGESTAMPLTFREGYGHYSNQQMLNEPLEEMVGKLVEEHPAAAAQLLESKGLFLLPMALVEDIRQAMQMFGGIPRV 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3300 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 234 IPR011598 GO:0046983
Dere01g3300 322 SMART finulus 191 240 IPR011598 GO:0046983
Dere01g3300 322 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 61 305 - -
Dere01g3300 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 186 254 IPR036638 GO:0046983
Dere01g3300 322 Gene3D - 184 253 IPR036638 GO:0046983
Dere01g3300 322 Pfam Helix-loop-helix DNA-binding domain 187 235 IPR011598 GO:0046983
Dere01g3300 322 CDD bHLH_AtbHLH_like 191 242 IPR045239 -
Dere01g3300 322 MobiDBLite consensus disorder prediction 174 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3300 Dere-ChrDere01 47739689 47742387 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3300 156 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 37.576 2.37e-22 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere01g3300 HLH 2.1e-06 No_clan