Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3296 ATGAATAGTGAAGAGACGCGCATAGGTTCAAAAAGAAAGTTCCCACATGATGACCGGCGGCAAGAAAATGGATCTTATTATAGGAATTTGCTTCCTCCTGGATGGTTAGACTGCCCAGCATATGGTCAAGAAATAGGGTGCATTATCCCTTCAAAGGTTCCGCTTGGTGAATCCTTTGATGATATCATTTCAAGTAAAAAATATTCTCCCAAGCAGGCAATTCTTCAACAAAGACATTTGGGTAGAGAAATCGGTCTAGTAATTGATTTGACAAATACTGCTCGTTACTACTCAGTATCAGATTGGACCAGAGAAGGGATTGGTTATGTCAAGATAAGATGCAAAGGAAGAGATGCTGTACCTGATGATGAATCTGTAAACAAATTTTGCAATGAGGTCCTGGATTTTCGCTCCCAAAGAACAAACACAAAGAAATTCATACTTGTGCATTGTACACATGGGCATAATCGCACTGGTTATATGATTGCTCATTTTCTTGTGCGCACAGAATCAATTTCAGTCAGTGAGGCAATAAATAAATTTGCCACAGCACGTGACCCTGGAATTTACAAGGCGGATTATATTGATGCACTTTACATGTTTTATCATGAACGGAAGCCTGAAGTAGTTGTTTGTCCTCAAACTCCAGAATGGAAGAGACTTTCTGATCCTGATTTTCATAGTGCAGTTGTCTCAACTGTAGAGAATATTGGAGATGTTCCTCTGCATGAGAATATCATGAGGAATGAGGTATTGACCAATGATGATGTTTTGGGAGATCCTGTGCCTTCAAATCAACTGCATGCAATGCGACAAGAATGTTACCAACTGCTTAAGTTGGGCAAAGGGGGAAGAGGATCTTTGCAGTTTCCTGGATCACATCCTGTTTCCCTCAACAGGGACAATCTACAACTCTTAAGACAGCGGTATTACTATGCCACATGGAAAGCTGATGGGACACGATATATGATGCTGATCACTTGGGATGGATGTTATTTGATTGACAGAAAATTTCATTTCCGAAGGGTACAGATGCGGTTTCCTTGCAGATATTTGAATGGGGGTACACCAGAAAGGAATCACCACTACACATTACTTGATGGAGAGATGATAATTGACACGGATCCACATACACAAAAGCAGGAGAGAAGATACCTTATTTATGATCTGATGGCTATTAATCAAGTTTCTGTGACTGAGCTACCTTTCTATGAACGATGGAAATTGTTAGAGAAAGAAGTCATTGAACCTCGTAACATGGAACGTGAGGCTCTTTGCAAGAGTATAAGTCCATATTATCGATATGACTTGGAACCATTTAGTGTGAGGAGGAAGGGTTTTTGGTTACTGTCTACTGTTTCAAAGCTTCTCAACAAATTCATTCCACAACTCTCACATCCATCAGATGGTCTTGTATTCCAGGGCTGGGATGATCCATATGTCCCTCGCACACATGAAGGTCTTCTGAAGTGGAAATACCCTGAAATGAACTCAGTTGATTTCCTCTTTGAGTTGGGAGCTAATGGCCGTTGCCTGCTTTTTCTTTATGAACGTGGGAAGAAGAAGTTAATGGAAGGGAATAGGGTTATTTTTAAAGATGTATCAGATATATCTGCCTATACTGGAAAGATCATTGAATGCTCCTGGGATCCTGAGGAGAATTATTGGGCCTGTATGCGGATTAGGATTGACAAATCAACTCCAAATGATGTCAATACCTACAGAAAGGTAATGCGAAGCATAAAGGATAACATTACAGAAGAAGTTGTTTTGAATGAGATCAATGAAATCATATGCCTGCCCTTGTATGCCGACAGAATACAAAGGGATATCAGGGCTCATCAACATATGGTCTCTGCAAGGCGCAGGTGA 1872 0.4049 MNSEETRIGSKRKFPHDDRRQENGSYYRNLLPPGWLDCPAYGQEIGCIIPSKVPLGESFDDIISSKKYSPKQAILQQRHLGREIGLVIDLTNTARYYSVSDWTREGIGYVKIRCKGRDAVPDDESVNKFCNEVLDFRSQRTNTKKFILVHCTHGHNRTGYMIAHFLVRTESISVSEAINKFATARDPGIYKADYIDALYMFYHERKPEVVVCPQTPEWKRLSDPDFHSAVVSTVENIGDVPLHENIMRNEVLTNDDVLGDPVPSNQLHAMRQECYQLLKLGKGGRGSLQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITWDGCYLIDRKFHFRRVQMRFPCRYLNGGTPERNHHYTLLDGEMIIDTDPHTQKQERRYLIYDLMAINQVSVTELPFYERWKLLEKEVIEPRNMEREALCKSISPYYRYDLEPFSVRRKGFWLLSTVSKLLNKFIPQLSHPSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLFELGANGRCLLFLYERGKKKLMEGNRVIFKDVSDISAYTGKIIECSWDPEENYWACMRIRIDKSTPNDVNTYRKVMRSIKDNITEEVVLNEINEIICLPLYADRIQRDIRAHQHMVSARRR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3296 623 FunFam mRNA capping enzyme family protein 27 239 - -
Dere01g3296 623 Gene3D DNA ligase/mRNA capping enzyme 253 490 - -
Dere01g3296 623 PANTHER MRNA-CAPPING ENZYME 28 604 - -
Dere01g3296 623 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 185 IPR000387 GO:0016311|GO:0016791
Dere01g3296 623 SUPERFAMILY Nucleic acid-binding proteins 495 608 IPR012340 -
Dere01g3296 623 FunFam mRNA capping enzyme, putative 253 490 - -
Dere01g3296 623 SMART dsp_5 54 204 IPR020422 GO:0006470|GO:0008138
Dere01g3296 623 Pfam mRNA capping enzyme, C-terminal domain 497 590 IPR013846 -
Dere01g3296 623 MobiDBLite consensus disorder prediction 1 23 - -
Dere01g3296 623 FunFam mRNA capping enzyme family protein 491 600 - -
Dere01g3296 623 CDD RNA_5'-triphosphatase 34 200 - -
Dere01g3296 623 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 31 219 IPR029021 -
Dere01g3296 623 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Dere01g3296 623 Pfam mRNA capping enzyme, catalytic domain 294 492 IPR001339 GO:0004484|GO:0005524|GO:0006370
Dere01g3296 623 CDD Adenylation_mRNA_capping 265 493 IPR001339 GO:0004484|GO:0005524|GO:0006370
Dere01g3296 623 Gene3D Protein tyrosine phosphatase superfamily 27 229 IPR029021 -
Dere01g3296 623 Gene3D - 491 599 IPR012340 -
Dere01g3296 623 PIRSF mRNA_capping_HCE 17 623 IPR017074 GO:0004484|GO:0006370|GO:0140818
Dere01g3296 623 Pfam Dual specificity phosphatase, catalytic domain 81 202 IPR000340 GO:0008138|GO:0016311
Dere01g3296 623 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 262 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3296 Dere-ChrDere01 47705287 47712818 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3296 25 623 Protein tyrosine phosphatase (PTP) family AT3G09100 63.097 0.0 778