Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3277 ATGGGTGTGCTGCCGAACAAGTTACAGGCTGCGGTGCAGTCGGCGCATTGGACTTACGGGGTCTTCTGGCAACATTGTGGAGAGCAAGGGATGCTGGTGTGGGGTGAGGGGTACTACAATGGAGGAATTAAGACTCGGAAGACGGTGCAGGGAATGGAGGAGAAAGTGGAGGAGGAGAGCGCTGCCGGAAGAAGCCGCCAACTGAGAGAGCTGTATGATTCGCTGTGCGCCGGCGAAACTCACCGCCCTTCCGCCTCCTTGTCGCCGGAGGACCTCACCCAGTCTGAATGGTTCTATCTGATGTGTGTCTCTTTCTCCTTTCCCCCAGGCGTCGGGTTACCAGGAAAGGCATATGAAAGGAGGCGGCATGTATGGCTGGCCGGAGCCAGCGAGGCTGACAGCAAAACGTTTACCAGAGCCATTCTTGCTAAGACCGTGGTGTGCATTCCTTTACTGGACGGCGTCGTAGAATTTGGCACAACGAAGAAGGTCGAAGAAGACCTTAAATTCATCCAACATGTGAAAAGCTTCTTTATAAAGGACCATCACCGCCACCCTTCTCCGCCAAAGCCCGCCCTCTCCGAGCACTCCACCTCTAATCCCATTCCCTCCGCCAACGAAGACGACATGGACGACGACGACGAAGAAGAAGAGGAAGAAGAAGGAGACTCTGAGTCCGAGGTAGAGGCGGAAATAGTGTGCAACAACCTCCCGACATCGATGCCTCGGGGCTCAGGCATAGGAGGAGATATGAGCAGGAGCAGCCAACCAAGCGAGCTATTGCATGTGGACATGTCGGAGGACATACGGGTCGGATCCCCCGATGATGCCTCCAACAACCTCGACTCCCATTTGGATTCGTCAGACGAGAGACGGACGCCGCTCCTGAGGTGGGAGGCCGCTGGCCTTCAACCACCGCCTTCAGTAGAAGACACTCACTACTCTCAAACCGTGTCCACCGTCCTACGCAATCAGCCCCGGCCGTGGCTCGGAGCAGCCTCCATCGACGACAACAACAATACTTACTCCACCCAGTCCGCTTTTGCCAAGTGGAACAGCCGCGCCGACCACTACATGCATGTCACCCTGGAAGGAACCTCTCAATGGCTGCTCAAGTACATTTTGTTTGACGTCCCTCTCCTCCACACCAAGTGTCACCACCAAGTTGCTGTCCGGTTGCGTGACAAGGGAATGCCACATGATGAGCTAAGCGCCAACCATGTGCTGGCCGAGCGCCGCCGCCGTGAGAAGCTGAACGAGAGGTTCATCATACTCAGATCGCTTATACCCGTCGTCACCAAAGTGGACAAGGCCTCCATACTAGGGGACACCATCGAGTACGTGAAGCAGTTGCGGAAAAGGATCCAGGATCTGGAGACAGACCACCGAAGCAGAGGACAAAAGAGGGGCGGGGGGTCAACGGTGATGGATGGGAGTGATATGGGGTCAGAGAAGAAGATAAGGGTGGAGGATGGGAGCAGTAGGGCGGCGAAAACAAAGATGGCGGAGGTGGTAACGTCGGTTCAGGTGTCTATCATACAGAGCGACGCTTTGTTGGAGATAGAATGCAAGTATAGAGAAGGGTTGTTGCTAAATGTGATGGAAATGCTTAGAGAAATGAGAATAGAGGTGAGGGGATTGCAGTCATCGGTGAACGGCGGGGTGCTTATGGCGGAGTTGAGCGCCAAGGTGAAGGAAAACCAAAATGGGAAGAAAGCCAGCATTGTGGAAGTGAAGAAAGCACTAAATCAAATTATACCACATTCTGACTATTAA 1776 0.5417 MGVLPNKLQAAVQSAHWTYGVFWQHCGEQGMLVWGEGYYNGGIKTRKTVQGMEEKVEEESAAGRSRQLRELYDSLCAGETHRPSASLSPEDLTQSEWFYLMCVSFSFPPGVGLPGKAYERRRHVWLAGASEADSKTFTRAILAKTVVCIPLLDGVVEFGTTKKVEEDLKFIQHVKSFFIKDHHRHPSPPKPALSEHSTSNPIPSANEDDMDDDDEEEEEEEGDSESEVEAEIVCNNLPTSMPRGSGIGGDMSRSSQPSELLHVDMSEDIRVGSPDDASNNLDSHLDSSDERRTPLLRWEAAGLQPPPSVEDTHYSQTVSTVLRNQPRPWLGAASIDDNNNTYSTQSAFAKWNSRADHYMHVTLEGTSQWLLKYILFDVPLLHTKCHHQVAVRLRDKGMPHDELSANHVLAERRRREKLNERFIILRSLIPVVTKVDKASILGDTIEYVKQLRKRIQDLETDHRSRGQKRGGGSTVMDGSDMGSEKKIRVEDGSSRAAKTKMAEVVTSVQVSIIQSDALLEIECKYREGLLLNVMEMLREMRIEVRGLQSSVNGGVLMAELSAKVKENQNGKKASIVEVKKALNQIIPHSDY 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3277 591 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 178 IPR025610 -
Dere01g3277 591 SMART finulus 408 457 IPR011598 GO:0046983
Dere01g3277 591 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 404 464 IPR036638 GO:0046983
Dere01g3277 591 Pfam Helix-loop-helix DNA-binding domain 405 452 IPR011598 GO:0046983
Dere01g3277 591 MobiDBLite consensus disorder prediction 181 290 - -
Dere01g3277 591 Gene3D - 399 467 IPR036638 GO:0046983
Dere01g3277 591 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 402 451 IPR011598 GO:0046983
Dere01g3277 591 PANTHER TRANSCRIPTION FACTOR TT8 4 588 - -
Dere01g3277 591 MobiDBLite consensus disorder prediction 206 228 - -
Dere01g3277 591 MobiDBLite consensus disorder prediction 458 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3277 Dere-ChrDere01 47529717 47535394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3277 4 585 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G63650 32.432 4.59e-89 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere01g3277 bHLH-MYC_N 6.3e-45 CL0161