Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3263 ATGGATCTCCATCACCCCCAAAACTCTGCTCCAAGACGGAGCTTGAAGCGGAAGCTGGAACAAGAATTCACAGAACAAGGAGCAGATCAACTAAGAGCCGATCGTAAAGTTTTGGTTCTTGAATCTCAACAGTCTCAGCGGGATCTGTTGGGTGAAGTTGCATCGCAAGTGACCATTCTCAACTCCAGCTTCTCACCATCTCAATCGGATCGTGTTGCGGCCAAGCGTGCCGTCCATGTTCTCTGTGAACTCGCAAAGAACGAGGAAATTGTAAATGGTATAGTGGACTGCGTTGCTGTTCCTGCTTTGGTGACGCATCTAAAAGCACCGGAACCAGCGACAGAAGGTGATTGTGTTCCCAAGCCTTACGAGCATGAAGTGGAAAAAGGATGCGCTTTCGTCCTTGGGCTTCTTGCTGTTAAACCAGAGCATCAGCAACTCATTGTTGATGCTGGAGCCTTGCCCTGTCTTATAGATTTGCTAAAGAGACACAAGACCTGTATCAATTCTCGGGCACTTACTGGTCTTATTCGGAGAGCAGCTGATGCCATCACAAACCTTGCACACGAAAATAGCAGCATTAAAACCCGTGTTAGGATGGAAGGTGGTATCCCTCCTCTTGTTGAATTGCTTGAATTCGATGATGCGAAGGTACAAAGGGCAGCTGCAGGGTCTTTACGAACCCTGGCATTTAAAAATGATGAAAACAAGAACCAGATAGTCGGATGCAATGCACTACCTACTCTTATATTAATGCTTGGGTCAGAGGATGCTGCAATACATTCTGAAGCAGTTGGCGTGATTGGAAATCTGGTCCACTCTTCTCCAAATATAAAGAAGGACGTCCTTCTAGCTGGAGCTCTACAGCCTGTAATTCGATTACTTAGATCTTGTTGTTCAGAGAGTCAAAGAGAAGCAGCCCTTTTGATCGGTCAGTTTGCTGCAACAGATTCAGACTCCAAGGTTCATATTGCTCAACGAGGGGCTATCCAGCCACTGATTGACATGCTCAAGTCTCCAGATGCACAACTTAGGGAAATGTCGGCTTTTGCGCTTGGGAGGCTTGCACAGGATACACATAATCAAGCTGGTATTGCTCATAATGGAGGTATAGAGCCTCTACTCAACCTTCTTGGCTCGAAGAATGGACCTCTCCAACATAATGCAGCCTTTGCTCTATATGGTCTTGCTGAAAATGAGGACAATATTGCGGATATTATTAAGCTTGGTGGTTTTAAAAAACTACAAGATGGAGATTTCAAAGTTCAACCTACCAAAGAGTGTGTAGGAAAGACTATAAAAAGATTAGAGGAGAAGATGCATGGACGAGTACTGAAACAACTGTTGTATCTTACCCGTTTTGGAGAAAAGGCTGTTCAAAGACGTGTGGCTCTGTCTCTTGCACATTTATGTGCCCCCGATGATCGGAAATTTATCTTCGTTGACAACAATGGACTTGAGTTGCTGCTGGATCTTCTGGAATCTACAAACCTCACCCAGAAGCGTGATGCTTCAATGGCGCTTCACTCGTTGGCCACCAAAACCACATCTGTCTCTCCGTTTGATGCTGCTCCTCCATCCCCGACTCCCCAGGTATACTTGGGTGAGCAATATGTAAACAATCCTACACTTTCTGATGTCACATTTTTAGTCGAAGGTAAACGGTTCTATGCTCACAGAATTTGTTTACTTGCTTCCTCTGATACGTTTCGCGCAATGTTTGATGGTGGTTACAGGGAAAGGGAAGCCAAAGATATAGAGATTCCAAATATTAAATGGGATGTTTTTGAGTTAATGATGAGATTCATATACACGGGAACAGTAGATGTCGAGTTGGATATTGCTCAGGATCTCCTTAGAGCCGCTGATCAGTATCTTCTGGAAGGTCTCAAACGTCTTTGTGAATATGCAATTGCTCAGGATATTTCTGTGGAAAATGTTTCTCTTATGTACGAGTTGTCAGAGGCATTCAATGCTATGTCATTAAGGCAAGCATGTATACTATTTGTGTTGGAACAATTCGACGAACTGAGCGCCAAACCGTGGTATTGCCGTCTGATGCGTCACATGTTACCAGATATACGCGAATTTTTCAGAAGTTTACTTACCAAGCCCACCCCTGTACTCGGGATTTAA 2136 0.4438 MDLHHPQNSAPRRSLKRKLEQEFTEQGADQLRADRKVLVLESQQSQRDLLGEVASQVTILNSSFSPSQSDRVAAKRAVHVLCELAKNEEIVNGIVDCVAVPALVTHLKAPEPATEGDCVPKPYEHEVEKGCAFVLGLLAVKPEHQQLIVDAGALPCLIDLLKRHKTCINSRALTGLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFDDAKVQRAAAGSLRTLAFKNDENKNQIVGCNALPTLILMLGSEDAAIHSEAVGVIGNLVHSSPNIKKDVLLAGALQPVIRLLRSCCSESQREAALLIGQFAATDSDSKVHIAQRGAIQPLIDMLKSPDAQLREMSAFALGRLAQDTHNQAGIAHNGGIEPLLNLLGSKNGPLQHNAAFALYGLAENEDNIADIIKLGGFKKLQDGDFKVQPTKECVGKTIKRLEEKMHGRVLKQLLYLTRFGEKAVQRRVALSLAHLCAPDDRKFIFVDNNGLELLLDLLESTNLTQKRDASMALHSLATKTTSVSPFDAAPPSPTPQVYLGEQYVNNPTLSDVTFLVEGKRFYAHRICLLASSDTFRAMFDGGYREREAKDIEIPNIKWDVFELMMRFIYTGTVDVELDIAQDLLRAADQYLLEGLKRLCEYAIAQDISVENVSLMYELSEAFNAMSLRQACILFVLEQFDELSAKPWYCRLMRHMLPDIREFFRSLLTKPTPVLGI 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3263 711 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 152 202 IPR000225 GO:0005515
Dere01g3263 711 CDD BTB_POZ_ARIA_plant 532 647 - -
Dere01g3263 711 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Dere01g3263 711 Gene3D - 39 173 IPR011989 -
Dere01g3263 711 Gene3D Potassium Channel Kv1.1; Chain A 536 680 IPR011333 -
Dere01g3263 711 SUPERFAMILY ARM repeat 74 512 IPR016024 -
Dere01g3263 711 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 7 706 IPR044282 -
Dere01g3263 711 Gene3D - 174 285 IPR011989 -
Dere01g3263 711 Pfam BTB/POZ domain 538 640 IPR000210 GO:0005515
Dere01g3263 711 SMART BTB_4 545 642 IPR000210 GO:0005515
Dere01g3263 711 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 369 411 IPR000225 GO:0005515
Dere01g3263 711 Gene3D - 286 521 IPR011989 -
Dere01g3263 711 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 328 370 IPR000225 GO:0005515
Dere01g3263 711 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 202 237 IPR000225 GO:0005515
Dere01g3263 711 SMART arm_5 141 189 IPR000225 GO:0005515
Dere01g3263 711 SMART arm_5 317 357 IPR000225 GO:0005515
Dere01g3263 711 SMART arm_5 473 513 IPR000225 GO:0005515
Dere01g3263 711 SMART arm_5 191 231 IPR000225 GO:0005515
Dere01g3263 711 SMART arm_5 233 273 IPR000225 GO:0005515
Dere01g3263 711 SMART arm_5 87 140 IPR000225 GO:0005515
Dere01g3263 711 SMART arm_5 275 315 IPR000225 GO:0005515
Dere01g3263 711 SMART arm_5 358 398 IPR000225 GO:0005515
Dere01g3263 711 Pfam Armadillo/beta-catenin-like repeat 198 230 IPR000225 GO:0005515
Dere01g3263 711 Pfam Armadillo/beta-catenin-like repeat 233 272 IPR000225 GO:0005515
Dere01g3263 711 ProSiteProfiles BTB domain profile. 545 612 IPR000210 GO:0005515
Dere01g3263 711 SUPERFAMILY POZ domain 536 639 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3263 Dere-ChrDere01 47437809 47443249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3263 191 415 U-box Gene Family AT5G67340 27.876 2.00e-13 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Dere01g3263 BTB 2.2e-26 CL0033