Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3246 ATGAGGCTGAGAAATCGGAAGCGATTTGTGGAGCAAGAAAAAGACAAGGTTTCTGGAGGTTTAGAGCAAGAGGTTTCTGATGTGGATGGTGAGGGTTTGGCGCATGAAACAGAGGCATTAAACTTGGCAATTGAAAACAACGAAGTGGAGCCAGTCGTACAACAACAATGCGACTTAGATTGTGATACGAGTAAGAATGAAAATGTTGGGTTAGCTGAGAATGGGAGTTTACGCTCTGATGATAACGTTCAAGGAGTTGACGTTGAGATGGAGATGAGGAAGAATTATGATTCGAATGATGAGATGCAAAGTGGTGGTCAAGTATTGCGCTTAATGTCAAAGAAAGCAGACAACAATGTATCCGATGATGGAGAGGCATTAAACTTGACAATTGAGAATATGGAAGCGGAGCCAATAGTACAACAAACATGTGACTTAGACTGGGATGTGAGTAAAAGTGGAAATGTTGGGTTAACTGAGAATGGGAACAAAAAGAGTAGCTTTAGCTGTGATGATAACATTGAAGGACTCGATATTGAGATGGAGGTGATGAAGGATGATGACAGAAACGATAAAGTGCAGATTGGTGATCGAATATTGCACTCATTGTCAAAGAGAGTAGACAATAAGATATTGGACGATGGAGAAATTGATGAGATGTTGGTTGGGAAAAGTAGAGAGAATGAACATGATTGGTTTGAGAATAATAAGGTTAAAGGAGAAAAGGAGAAAGGTGGTGAATCTGTTAGTAGTGGTTATGAGAAGGAAATTGTTCAAGTGCAAAAAGAAGGCAACAACAGAACAGAGCTGAAACGGAAGCGTGGGAGGCCCCCCAAATTGAAGGTGGAAGAGCAAGATCAATTAGTTGGTAATATGCAACAGAAGTATGGGAAGTCCCCTGAAATGAAGATGGAAGAGCAAGAGCAATTTGATGGTGAAAAATTGCAACGGAAGCGTGGCAGGCCCCCGAAATTGAAAATGGATGAGCAAGATCAATTTGTTGGTGAAAAAATGCAACGGAAGCGTGGCAGGCCCCCCAAAGTGAAGATGGATGAGCAAGATCAACTTGTTGGCAGAAAAATGCAACAGAAGCGTGGTAGGCCACCCAAAATGAAGATGGAAGTGCAATATCAATTTCTTGGTGAAAAAATGCAACGGAAGCGTGGTAGGCCCCCCATAATGAAGATGGAAGAGAAAGATCAATTTGCTGGTGAAAAAATACAACGGAAACGTGGCAGGCCCCCTAAAATGAAGACAGCTGAGCAAGATCAATTTGTTGGTCAAAAAATGCAACGGAAGCGTGGAAGGCCTCCCAAGGTTGGGCTAAAAAATAATCTTCTGAAAGTATCACACATTGGAAAAGGAAAGGTGGGCTTTCAAAAAGGTAAGAAAGGTTTAACTGTGGGAGATGGTGGAAATATGAATCCAATTGATGATGTGTGCTCAAAAAGGGAATCTCCTGTGAAAGAGTTAAAAAAGAAGAGATTTTATCATGTAAAGAAGAGTGGATCTGGGAACTTACTGAAAACTGAGAAAAGTGAGGTGGCTTCACCATTAAGATCAGATTCTGTGAATCCTCTGGTTACTGAAAAAAGAGGAATAAATAAAGTGAAGCAGTTAGTGAGACAACACATTTTGGAGCTTCTCTTGGCTGCAGGCTGGTTTGTTGACTACAGACCTAGGAATGGTAAAGAGTATAATGATGCAGTGTATGTCAGTCCAGATGGAAAGACTCACTGGTCAATTACCTTGGCCTACAAAAGGCTTCAGGAGCATTCTGAAGCTGGTGATGGTGAAGGTAAGGTATACAGGCCAGGTTTCAAATTTGCACCAATATCAAAGCAGGAATTCAATATACTAACCAAGGTCATTATAAAGAAAAGGAAAAGTAAAGAGAACAAAAAACAAACAGGAGGAAATGGAATAAAAAAGAAAGTGAAGAGAGTTAAGCCAGGTTCTTTTGGAGGCTTCAGTAAGTCAATGAAAGGAAAAAGGAAGATGAAATTGTCATTTGTTGAGGAGGACAATTCAGATGTTACATCACATGAAAGGTTTCCAGTTCTGGTCAAGGATCGTAAGCGACAGAAAACGCAATACAAGAAGCGGGGTGCATTGTTGGTTCGTGATGCTGAGAAGGAGATAGATTCAGAAATTGATGGATATGTACCTTACACTGGAAAACGAACTCTGCTGACCTGGATGATTGATTTGGGAACAGTCCTGCAAAATGGGAAGATTCATTATGTGAACCCGAGAAGGAAAGGAACAAAACTGGAGGGTAGGATCACAGGAGACGGGATTCATTGTAGCTGCTGTAATAAAGTCATTACAATATTAGAATTCGAAGCCCATGCAGGAAGTAGACTCTCTGATCCACTCAAAAATATATGTATAGAGGGAGGAACTTCCCTTTTACAATGCCTGCTAGACTCATGGAATAAACAAGATGAATCTGAAAGGAAAGGTTTCCATTTCATTGACACTTCGAGTGAAGACCCTAATGATGATACATGTGGTGTCTGTGGTGACGGTGGAGATCTGATCTGTTGTGATAGTTGCCCATCAACATTCCATCAAAGCTGCCTAAATATTAAAAAGTTTCCATCTGGTGACTGGCACTGCATTTATTGCTGTTGCAAATTTTGTGGGACAGTTGGTGGAAGTACAAATGAAAGAGATGGTGACAATGACTTACCTGTATCTGCTTTACTCACATGCCTTTTATGCGAGCAAAAATATCATAGATCCTGTGTTGTGGTAAATGGTATCGCAGCTGATGACTCCAGTGTTGCATTCTATTGTGGAAACAGATGTCAGGAGTTATCTGACAGACTTAAAATGCTTCTTGGGGTTAAACATGACATTGAAGATGGATTTTCTTGGACTTTTATTCGTCGGTCAGATGTTGGCTCTGATGCTTCTCAGATAGAATCCCAGATGGTTGAATGTAATTCCAAGCTGGCAGTTGCATTATCTGTGATGGATGAGTGCTTTATGCCTTACATTGATCACAAAAGTGGGATTAATCTGATCCACAGTATTCTTTATAATTGTGGGTCAAACTTCAATCGCTTGAACTATAGTGGTTTTATTACTGCAATTCTGGAGAGAGGTGATGAGGTCATCTGCGTGGCATCTATTAGGATCCGCGGGAGCCAACTAGCAGAAATGCCATTTATTGGGACCCGCTATATGTATAGACGGCAAGGAATGTGTCGTCGGCTTCTAAGAGCCATTGAATTGGCACTAAGCTCTTTAAATGTTGAGTTGTTGGTCATACCAGCAATCTCAGAACTTAGAGAAACTTGGACTTCTGTTTTTGGGTTTGAGCCGCTTGGAGTGACAAGGAAGCAAATAATAAAGAACTTAAATCTGTTGGTATTCCCTCATGTAGATATGTTACAGAAAGAGATAAAGCCTAGAGTTGCTGATAAGAATCTGATTTCTATGGAAGTTTCCAATTCTCAGCTTCAGAAGAATCAAAGTACACATGAGGAAGCAAATAACTGTCATAAGGCGGGTTCATTTGGATCTGATTTCATCGTTTCTGCTGGGAGTGGTATCGCTGCCTTGAATGCCTTGAACATGTGCCGGATAAATGATGAATACTTGTCTGTTAAATCTGGTTCTTCTGATGACTTATCAAATAATTGTAGCATACATGACATTACTATTGAGACTATACATCACGATACAAGTCCAAAAGATGTAAAATGTGAAGCTGCATGTCATGCAGTCTTTGATAATTTGACAGTGGACGACAAAACTACTTGCCAAATTGAAGAGACAAGCAATCCTGGTTGTTTTCAGTCGTATCCCATAGGATCAAAAGAAAATGGTGATTGTGTCCCTGGTGAAGTGAATTCCGAGACAATTAAAGCTGATGGTGTAAATGAGAGGGGCGAAGCAGCCAGCGCAGCAGACAGAAAATCAGATCTTAATGATAAGCCTCAGATGATGCAGCTACCTGACCTTGATTTACAGGTTGATCAAACTGCACGGATTAACGCTCCATCCTTGTGTAGCAGCCCAAACACTGCTTCCGGCATGGCTCTTCACTGTGCATCAGCTTCATGTGGTAATACTGAAGTAATAGTTCTGTCAAACCAAGCCAGTTGA 4119 0.4084 MRLRNRKRFVEQEKDKVSGGLEQEVSDVDGEGLAHETEALNLAIENNEVEPVVQQQCDLDCDTSKNENVGLAENGSLRSDDNVQGVDVEMEMRKNYDSNDEMQSGGQVLRLMSKKADNNVSDDGEALNLTIENMEAEPIVQQTCDLDWDVSKSGNVGLTENGNKKSSFSCDDNIEGLDIEMEVMKDDDRNDKVQIGDRILHSLSKRVDNKILDDGEIDEMLVGKSRENEHDWFENNKVKGEKEKGGESVSSGYEKEIVQVQKEGNNRTELKRKRGRPPKLKVEEQDQLVGNMQQKYGKSPEMKMEEQEQFDGEKLQRKRGRPPKLKMDEQDQFVGEKMQRKRGRPPKVKMDEQDQLVGRKMQQKRGRPPKMKMEVQYQFLGEKMQRKRGRPPIMKMEEKDQFAGEKIQRKRGRPPKMKTAEQDQFVGQKMQRKRGRPPKVGLKNNLLKVSHIGKGKVGFQKGKKGLTVGDGGNMNPIDDVCSKRESPVKELKKKRFYHVKKSGSGNLLKTEKSEVASPLRSDSVNPLVTEKRGINKVKQLVRQHILELLLAAGWFVDYRPRNGKEYNDAVYVSPDGKTHWSITLAYKRLQEHSEAGDGEGKVYRPGFKFAPISKQEFNILTKVIIKKRKSKENKKQTGGNGIKKKVKRVKPGSFGGFSKSMKGKRKMKLSFVEEDNSDVTSHERFPVLVKDRKRQKTQYKKRGALLVRDAEKEIDSEIDGYVPYTGKRTLLTWMIDLGTVLQNGKIHYVNPRRKGTKLEGRITGDGIHCSCCNKVITILEFEAHAGSRLSDPLKNICIEGGTSLLQCLLDSWNKQDESERKGFHFIDTSSEDPNDDTCGVCGDGGDLICCDSCPSTFHQSCLNIKKFPSGDWHCIYCCCKFCGTVGGSTNERDGDNDLPVSALLTCLLCEQKYHRSCVVVNGIAADDSSVAFYCGNRCQELSDRLKMLLGVKHDIEDGFSWTFIRRSDVGSDASQIESQMVECNSKLAVALSVMDECFMPYIDHKSGINLIHSILYNCGSNFNRLNYSGFITAILERGDEVICVASIRIRGSQLAEMPFIGTRYMYRRQGMCRRLLRAIELALSSLNVELLVIPAISELRETWTSVFGFEPLGVTRKQIIKNLNLLVFPHVDMLQKEIKPRVADKNLISMEVSNSQLQKNQSTHEEANNCHKAGSFGSDFIVSAGSGIAALNALNMCRINDEYLSVKSGSSDDLSNNCSIHDITIETIHHDTSPKDVKCEAACHAVFDNLTVDDKTTCQIEETSNPGCFQSYPIGSKENGDCVPGEVNSETIKADGVNERGEAASAADRKSDLNDKPQMMQLPDLDLQVDQTARINAPSLCSSPNTASGMALHCASASCGNTEVIVLSNQAS 1372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3246 1372 SUPERFAMILY FYVE/PHD zinc finger 829 883 IPR011011 -
Dere01g3246 1372 PANTHER PHD FINGER PROTEIN 12 525 1289 IPR042163 GO:0003714|GO:0045892
Dere01g3246 1372 SMART PHD_3 837 878 IPR001965 -
Dere01g3246 1372 SMART PHD_3 879 939 IPR001965 -
Dere01g3246 1372 MobiDBLite consensus disorder prediction 1 27 - -
Dere01g3246 1372 MobiDBLite consensus disorder prediction 260 283 - -
Dere01g3246 1372 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 978 1138 IPR000182 GO:0016747
Dere01g3246 1372 Pfam AT hook motif 364 372 IPR017956 GO:0003677
Dere01g3246 1372 Pfam AT hook motif 409 419 IPR017956 GO:0003677
Dere01g3246 1372 Pfam AT hook motif 271 279 IPR017956 GO:0003677
Dere01g3246 1372 Pfam AT hook motif 317 324 IPR017956 GO:0003677
Dere01g3246 1372 Pfam AT hook motif 340 348 IPR017956 GO:0003677
Dere01g3246 1372 Pfam AT hook motif 432 440 IPR017956 GO:0003677
Dere01g3246 1372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 826 893 IPR013083 -
Dere01g3246 1372 PRINTS AT-hook-like domain signature 337 348 IPR017956 GO:0003677
Dere01g3246 1372 PRINTS AT-hook-like domain signature 429 439 IPR017956 GO:0003677
Dere01g3246 1372 PRINTS AT-hook-like domain signature 271 281 IPR017956 GO:0003677
Dere01g3246 1372 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1028 1116 IPR016181 -
Dere01g3246 1372 Pfam Tify domain binding domain 760 809 IPR032308 -
Dere01g3246 1372 SMART AT_hook_2 408 420 IPR017956 GO:0003677
Dere01g3246 1372 SMART AT_hook_2 271 283 IPR017956 GO:0003677
Dere01g3246 1372 SMART AT_hook_2 385 397 IPR017956 GO:0003677
Dere01g3246 1372 SMART AT_hook_2 339 351 IPR017956 GO:0003677
Dere01g3246 1372 SMART AT_hook_2 316 328 IPR017956 GO:0003677
Dere01g3246 1372 SMART AT_hook_2 362 374 IPR017956 GO:0003677
Dere01g3246 1372 SMART AT_hook_2 431 443 IPR017956 GO:0003677
Dere01g3246 1372 MobiDBLite consensus disorder prediction 260 370 - -
Dere01g3246 1372 MobiDBLite consensus disorder prediction 407 441 - -
Dere01g3246 1372 MobiDBLite consensus disorder prediction 299 370 - -
Dere01g3246 1372 CDD PHD2_CHD_II 838 877 - -
Dere01g3246 1372 ProSiteProfiles Zinc finger PHD-type profile. 835 880 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3246 Dere-ChrDere01 47228837 47237687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3246 270 1144 PHD Transcription Factor Family AT5G36670 38.280 0.0 599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3246 01 47228837 47237687 Dere02g0693 02 6541700 6550366 CCT
Dere01g3246 01 47228837 47237687 Dere01g3246 01 47228837 47237687 ECH