Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3221 ATGGAGCAGTATGAAATTCTAGAACAGATTGGCAAAGGTTCCTTCGGTTCTGCTCTGCTTGTGAGGCACAAGCATGAAAGGAAAAGGTATGTCCTCAAGAAGATCCGTCTTGCCCGTCAAACTGATAGAACCCGTAGATCTGCCCACCAGGAGATGGAGCTTATCTCGAAAGTACAAAATCCATTTATAGTTGAATATAAAGATTCCTGGGTAGAAAAGGGTTGCTTCGTATGCATCATCATAGGCTATTGTGAAGGTGGAGACATGGCTGAAGCTATTAAAAAGGCTAATGGCATTCATTTTCCTGAAGAGAAGCTATGCAAATGGCTCGTTCAACTCTTGATGGCGCTAGATTACTTGCATGCAAACCATATCCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGACATACGACTGGGTGATTTCGGTCTAGCTAAATTATTGACATCTGATGATCTTGCTTCCTCAGTTGTTGGGACACCGAGTTACATGTGCCCTGAGCTTCTCGCTGATATACCCTATGGATCTAAGTCTGATATCTGGTCTTTGGGCTGCTGTGTATATGAAATCGCTGCCCACAAACCAGCTTTTAAAGCTTTTGATATGCAAGCTTTAATTAACAAAATAAACAAGTCGATTGTGGCTCCTCTTCCAACCATGTATTCTGGTGCTTTTCGAGGGCTTGTCAAAAGCATGCTACGGAAAAATCCGGAGCTTAGACCAAGTGCTGCAGAGTTACTAAATCATCCGCATCTTCAGCCTTACATTCTTAAAATTCACTTAAAACTAAACAGCCCTAGAAGAAGTACTTTTCCATTTCAATGGCCTGAGTCAAACTATGTAAGGAGAACTCGGTTTGTGGAGCCAGATTCTGTTTCTTCCCTTTCTGACAGGGATAAACGCTTGTCATTTAGTAATGACAGGGCCTTGAATCCTAGTATTTCTGGAACTGAAAAAGATTCTCAGTGTTCTACTCAAAATGCACTTGGATTTTCCACTCGTTCAAAGGAGAAACTCTACGAATTATCTGTTGGCTGTGTCCGTGATGAATGCATAACTAACAAGTCAAAAGCCACAAAGTTCTCAACTGTTGATAGTTGTACTCCAAGATTGAGAGCAGCTAAGGATTCTGCCACTCCCAGAAGGCAGACAGTGCCGTCAAAAATATTTCATACTGGTTCAAAGCGTGATTCACTTCCAGTGTCTCATACTCCAGCTGGAAATTCTTTGCTGCCGTCACGAAGAGCATCCCTTCCACTACCTACGAGAGGCATGGTGACGGCAACCCCTTATAGAGCCCAAGTTGGCCTCCTCCGGAGTGTGGAGTCTCCAGATGTTTCCGTTAATGCACCACGAATTGACAAGATTGCTGAATTCCCTCTCGCCTGTTCCGAGGATGCTATCTTTGCTGTCCCTAGAACATCACCAACGTCCGTTCGGTGCTCTTCTAGTTCACCATTGGGTGCTGACTGCTCAATTACAAAGGACAAGTGTACTGTCCAGGTTGTGGACAAATCCATAGCAGGCCCTGCCAGTGTGAGTGATACTTGTCCTGAAGCTCCAGGTCCAGGATATGGAAGTGAATGCTCTGAGCATGTCACAACTGGTGTTTCAAGCCGTTCCTCTGCAGAGTCACGACAGCGTAGGTTTGACACCTCGTCTTACCAGCAGCGTGCTGAGGCATTGGAGGGTTTGCTTGAATTCAGTGCAAGGCTTCTACAACAACAGAGGTTTGAAGAACTTGGAGTGTTATTGAAGCCATTTGGACCTGAGAAGGTTTCTCCAAGAGAAACTGCTATTTGGTTGACAAAGAGTTTTAAAGAAACCGTGGTCTAA 1854 0.4407 MEQYEILEQIGKGSFGSALLVRHKHERKRYVLKKIRLARQTDRTRRSAHQEMELISKVQNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKANGIHFPEEKLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKLLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEIAAHKPAFKAFDMQALINKINKSIVAPLPTMYSGAFRGLVKSMLRKNPELRPSAAELLNHPHLQPYILKIHLKLNSPRRSTFPFQWPESNYVRRTRFVEPDSVSSLSDRDKRLSFSNDRALNPSISGTEKDSQCSTQNALGFSTRSKEKLYELSVGCVRDECITNKSKATKFSTVDSCTPRLRAAKDSATPRRQTVPSKIFHTGSKRDSLPVSHTPAGNSLLPSRRASLPLPTRGMVTATPYRAQVGLLRSVESPDVSVNAPRIDKIAEFPLACSEDAIFAVPRTSPTSVRCSSSSPLGADCSITKDKCTVQVVDKSIAGPASVSDTCPEAPGPGYGSECSEHVTTGVSSRSSAESRQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLTKSFKETVV 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3221 617 MobiDBLite consensus disorder prediction 397 417 - -
Dere01g3221 617 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Dere01g3221 617 Gene3D Transferase(Phosphotransferase) domain 1 84 271 - -
Dere01g3221 617 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Dere01g3221 617 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Dere01g3221 617 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Dere01g3221 617 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3221 617 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 573 - -
Dere01g3221 617 MobiDBLite consensus disorder prediction 397 423 - -
Dere01g3221 617 SUPERFAMILY Protein kinase-like (PK-like) 1 313 IPR011009 -
Dere01g3221 617 CDD STKc_Nek 3 258 - -
Dere01g3221 617 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3221 617 MobiDBLite consensus disorder prediction 539 560 - -
Dere01g3221 617 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3221 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3221 Dere-ChrDere01 47043419 47048090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3221 10 259 MAP Kinase Kinase Kinase AT1G53570 30.980 9.92e-37 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Dere01g3221 Pkinase 2.9e-63 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3221 01 47043419 47048090 Dere01g3221 01 47043419 47048090 ECH