Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3213 ATGAATTATCTGTACACAGTGAAAGAAGAGTACTTCGAACCATCTCCATCTCAAGCAGGAAGTGAACTACCAATGATTCCACCTCCTCAGCCAATGGAGGGACTTCATGACATAGGACCACCCCCATTTCTCACCAAGACATTTGATGTGGTGGACGACCCGACCACCGACCACATAGTCTCGTGGAGCGAAGGAGGAACAAGCTTTGTCGTTTGGGATCCTTACTCCTTCTCTATCAATGTCCTTCCTAAATACTTCAAGCACAACAATTTCTCAAGCTTTGTCAGGCAATTAAACACTTATGGCTTTAGAAAAATTGATCCAGATACATGGGAGTTTGCAAATGACGGATTCCTTAGAGGACACAAGCATCTATTGAGGAACATACGGAGAAGGAAAGCACCATCTCAGGCTACTGCTTCCCCACAAGCACTAGGTCATTGTGTAGAAGTTGGGAGGTTTGGAGCAGATGAAGAAATATGTCGTCTACGGCGTGACAAGCAAGTGTTAATGATGGAGCTTGGGAAGCTTAGACAGCAGCAACAGAATACCAGAGCCTACCTTCAGGCGATGGAGCAGAGGTTACAAGGCACAGAAATGAAGCAGCAACAAATGATGGCTTTCTTAGCAAGAGCTATGAATTATCCTGCTTTTGTCTGCCAACTACTCCAACAAAAGAAGAGAAAGGAGCTGGAAGAAGCCATGACTAAGAAAAGGAGAAGGCCGATTGAGCAAGGACCAAGTTATGTTGGTGAATCAAGCAGTGAAAGTGAGGAAAGGAATCCTGTTAAAGTTGAGCCCCTAGAATTCGGAAATTACGGGTTTGAAGTGTCAGAGCTTGAGGTGCTAGCTATGGAAATGCAAGGTCTTGGTAGGGGGAGCAAAGAGCAGGATACACTAGAATCATCAGAGAGGCTGGGCAAAGAACTTGACGAAGGGTTCTGGGAAGAACTTTTTAGTGAAAATTTTGAGGGTGAATTAGATATTCCAAGCGATGAAGGTGAAGATGAAGATGTGGATATCAATGTCTAA 1032 0.4438 MNYLYTVKEEYFEPSPSQAGSELPMIPPPQPMEGLHDIGPPPFLTKTFDVVDDPTTDHIVSWSEGGTSFVVWDPYSFSINVLPKYFKHNNFSSFVRQLNTYGFRKIDPDTWEFANDGFLRGHKHLLRNIRRRKAPSQATASPQALGHCVEVGRFGADEEICRLRRDKQVLMMELGKLRQQQQNTRAYLQAMEQRLQGTEMKQQQMMAFLARAMNYPAFVCQLLQQKKRKELEEAMTKKRRRPIEQGPSYVGESSSESEERNPVKVEPLEFGNYGFEVSELEVLAMEMQGLGRGSKEQDTLESSERLGKELDEGFWEELFSENFEGELDIPSDEGEDEDVDINV 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3213 343 ProSitePatterns HSF-type DNA-binding domain signature. 82 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere01g3213 343 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 29 266 IPR027725 -
Dere01g3213 343 Pfam HSF-type DNA-binding 43 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere01g3213 343 Gene3D - 36 133 IPR036388 -
Dere01g3213 343 FunFam Heat shock transcription factor 1 36 133 - -
Dere01g3213 343 SUPERFAMILY "Winged helix" DNA-binding domain 39 132 IPR036390 -
Dere01g3213 343 SMART hsfneu3 39 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere01g3213 343 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere01g3213 343 PRINTS Heat shock factor (HSF) domain signature 43 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere01g3213 343 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere01g3213 343 MobiDBLite consensus disorder prediction 322 343 - -
Dere01g3213 343 MobiDBLite consensus disorder prediction 232 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3213 Dere-ChrDere01 46908519 46909656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3213 29 341 HSF AT3G22830 51.282 9.32e-116 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Dere01g3213 HSF_DNA-bind 4.9e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3213 01 46908519 46909656 Dere02g0720 02 6732897 6734779 CCT