Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3211 ATGTTTCCTGCAGCCATGTCCAATTCTACCACTTCTTTGTCCGAAGAACCCACTGTCTCTTCTGCTACAAGACTTCATGACCTCTCTGGACTAAATCCCCTACTCTCCACAATTCCTGCTCAGCAGCCTCAAAAGATCAAGAAAAAGAGAAGCCTCCCTGGAAACCCAGACCCAGATGCAGAAGTGATAGCGCTATCCCCGAAGACACTTTTAGCCACCAATAGGTTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGACCAGAACCTTCAACTTCATAGGAGAGGTCATAACCTGCCATGGAAGCTGAAGCAAAGGAACAGCAAAGAGGTGAAAAAGAGAGCCTACGTTTGCCCCGAGCCTTCATGCGTTCATCACAATCCCTCGCGGGCTCTGGGGGACCTCACTGGAATTAAGAAACACTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGCGAGAAATGTTCAAAGATCTACGCTGTTCAGTCAGATTGGAAAGCACACTCAAAAACCTGTGGAACTAGAGAATATAGATGTGATTGTGGAACTCTCTTCTCCAGGAAGGACAGCTTCATAACTCATAGAGCATTCTGTGATGCACTGGCGGAAGAGAGTGCAAGACTTTCTGCAAACCAACTAGCCTCCAGCACCACTAACCCACTATTCCAATCTCTCTTCCTTTTCCCAAACCAACACAACTTCCTCAATCCATGGGACCAATCTCAAGAAAACCCTAACCCTAGCAACGCTCTCCAAATCAAGCCTGAAGCTCAACATTTCCAGATGCCTCCCTCGTTTCTTCAGGAATATTCTCATCCTCACCACAAGACCACTCTGATAAACTCACCCTTCCCGAACCTCCACGTGCCCGCGCAACCTTCCTCAAACACTGCCACGTCAGCCCACCTGTCTGCCACTGCACTCCTCCAAAAGGCTGCAACCATTGGTGCCACCCCAATCACAGCCCAACCATCTCAGTCTCAGCCTCATCACGTGACTCAGATTAGCATGGGCGAGTTTGGATCAATGAGTCAGCTCGACTCGATGATGCCCGACTATATGAGAGGGATCGCGGCTCGGAATCTTAAGAATGAGCATCTGACGAGGGACTTTTTGGGTATCAGCGGCGATGCCAACGGAGAAGGCGACGGTGAGAATGGCGGTGCGGTCAACGTGAAGGATGTGATGACGTTCACGGGAGACGTATACGAGCACCATCACCATTCGCTCTTCAAGTCCCGACAAGGATTCGGATTCGTTGGGACTACCACTGCCCCGGAGACGTGGGGCAATTATCGAACTCAATAA 1314 0.4962 MFPAAMSNSTTSLSEEPTVSSATRLHDLSGLNPLLSTIPAQQPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLASSTTNPLFQSLFLFPNQHNFLNPWDQSQENPNPSNALQIKPEAQHFQMPPSFLQEYSHPHHKTTLINSPFPNLHVPAQPSSNTATSAHLSATALLQKAATIGATPITAQPSQSQPHHVTQISMGEFGSMSQLDSMMPDYMRGIAARNLKNEHLTRDFLGISGDANGEGDGENGGAVNVKDVMTFTGDVYEHHHHSLFKSRQGFGFVGTTTAPETWGNYRTQ 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3211 437 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 33 389 IPR031140 -
Dere01g3211 437 MobiDBLite consensus disorder prediction 1 21 - -
Dere01g3211 437 FunFam protein indeterminate-domain 12-like 55 123 - -
Dere01g3211 437 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Dere01g3211 437 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Dere01g3211 437 SMART c2h2final6 152 172 IPR013087 -
Dere01g3211 437 SMART c2h2final6 76 98 IPR013087 -
Dere01g3211 437 SMART c2h2final6 117 147 IPR013087 -
Dere01g3211 437 Pfam Zinc finger, C2H2 type 76 98 IPR013087 -
Dere01g3211 437 SUPERFAMILY beta-beta-alpha zinc fingers 75 172 IPR036236 -
Dere01g3211 437 Gene3D Classic Zinc Finger 145 210 - -
Dere01g3211 437 Gene3D Classic Zinc Finger 55 124 - -
Dere01g3211 437 FunFam protein indeterminate-domain 5, chloroplastic-like 130 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3211 Dere-ChrDere01 46898586 46901674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3211 25 423 IDZ Gene Family AT4G02670 50.827 4.68e-126 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere01g3211 zf-C2H2 0.0043 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3211 01 46898586 46901674 Dere02g0115 02 1151963 1154669 CCT