Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3206 ATGGCGTACGCATCGACCTTGCGGAATCATCCCTTACTAGCTTTTGGGGCTTATGATTCCCAGGCAAAGGGCAGCAATCTACTGAACAGAGCTGTTGCCTTCCTTCACACATCTTCTGAAATTGTTATTGAGCTTTTTGCCAGTATCGTTCCTAGAACAGCTGAGAATTTTCGGGCACTCTGTACAGGTGAGAAGGGCATCGGGAAATCAACTGGAAAACCTTTGCATTATAAAGGAACTTGTTTTCATCGTATAATTAAAGGATTTATGGCCCAAGGTGGTGATTTTTCAAGGGGCAATGGCACTGGTGGAGAAAGTATTTATGGAGGAAAGTTTGCTGATGAAAATTTCATATTGAAGCATGACGGACCTGGCCTTCTATCTATGGCAAATGGTGGCCCAAACACAAATGGTTCCCAGTTCTTTATTATCTTCAAGCGCCAACCTCATCTTGATGGGAAACATGTTGTGTTTGGAAAAGTTGTCAATGGGTTGGATCTTCTTAAGAAAATTGAACAGGTAGGAACACCAGATGGGAAGCCTGTCCGGCCAGTTAAAATCATTGATTGTGGTGAAACCTCAGAAACTAAAATTGAGGCAACAATTGGAAAAGAGAAAGGGAAAAAGAGAAAATCAGGGAAATCCCCAACTTCTGATGATAGTTCTGACAAAAAATCAAGAGGAAGGCGAAAAAGATCTTCAAAGGATTTGAGGAAGAGGAGAAGATACTCAACATCTGATTCATACAGCTCGGATAGTGATAGTGATTCTGTATCCTCAGATTCTGAGTCAGATTCAGAGACAGAATCATCACTTTCTGATTCGAGTTCCTCTAGCTATGGGAAACACCGGAAGAGGAAACCTTCAAAAAGATATAGGAACAAGCATGAGAAGAAGAGAAAAACTGGACGCAAGCAAAGGAGAAGCCAGCATAATAGAAGATCAAGAAACAAGTCCAAATGGAGCTCAGAGGATTCAAGTGATACAGGAAGTGATAGTGGCAGCAGTTCTGATGACAAGAAAGCTGATCACCATGTCTCTGGTCACAAAAGACATGCTGACAACAAACGACAAAGAAATTTAGAAACAGGAAAGCAATCATCCAGCCCTCCTTTAGTTAGAACTGCTCCAGATCAAGGGAAGGATTCCATGGTTAGAAGAACTGAGAACAAGCAATCACATGAAGAAGGTGAATTGTCTCCAGAAAATTCTGACCTTCTGAATAACGGGCATGATACTGAAGCCAAATTCAATAAATCTGCTAAGCAACCCACTCGTTTGGATGATTCAGATCACAATAGAGGTGCAAGTCCTGGAAGAAGTGATGGTAGGAGTCCCACTAGGAAGTTGGTTGAGCAAAACCAAGGTCCTCGCCAAACTGCTGCCTCCAAACATAGTCAGGGGTCAAAAAGCCCTTCACCAAATGGTGTACCAAAGCGTGTTAGGAAAGGTCGTGGCTTCACGGAGCGCTATGCCTTTGCACGCAAATATCGTACTCCATCTCCAGAGCGGTCACCACGTTCCTATCGTTATGGTGATAGAAATATAAGAAGGAACTTTGACAGACATACAAGTTACAGAAGCTACTCTGAGCGTTCACCGCAGAGACGTTATCGAAGCCCTCCAAGGCGCAGGAGCCGACCAAGATACCAAAGCAGAAGAAGCCGGAGTAGGAGCATCTCAAACAGTCCAGTGCGTGGCCGTTTTAGGGACCGTGGTCGTAGCCAGAGTCCAATACGTAGCCCTAGCCCAGAGGGCAGGCGCCCTCCAATAAGTGACAGATTAAAATCCCGACTTGGTCCTCAAAGTGTTCAACACTCTCCTAACAAAGGAAGGTCCAGGTCTAATTCCAGGAGTCCTGACTTGTCTCACTCTAGATCCCCTGATGCTACACCACCTAGGCATCGTGATAAAAGGATTTCTGTATCTCCCAGCAGGTCTAGATCTAGTTCGTCATCTGGACAAAAGGGTTTAGTTTCTTACGGAGATGCCAGTCCGGATTCTGGAGCAAGGTAG 2016 0.4449 MAYASTLRNHPLLAFGAYDSQAKGSNLLNRAVAFLHTSSEIVIELFASIVPRTAENFRALCTGEKGIGKSTGKPLHYKGTCFHRIIKGFMAQGGDFSRGNGTGGESIYGGKFADENFILKHDGPGLLSMANGGPNTNGSQFFIIFKRQPHLDGKHVVFGKVVNGLDLLKKIEQVGTPDGKPVRPVKIIDCGETSETKIEATIGKEKGKKRKSGKSPTSDDSSDKKSRGRRKRSSKDLRKRRRYSTSDSYSSDSDSDSVSSDSESDSETESSLSDSSSSSYGKHRKRKPSKRYRNKHEKKRKTGRKQRRSQHNRRSRNKSKWSSEDSSDTGSDSGSSSDDKKADHHVSGHKRHADNKRQRNLETGKQSSSPPLVRTAPDQGKDSMVRRTENKQSHEEGELSPENSDLLNNGHDTEAKFNKSAKQPTRLDDSDHNRGASPGRSDGRSPTRKLVEQNQGPRQTAASKHSQGSKSPSPNGVPKRVRKGRGFTERYAFARKYRTPSPERSPRSYRYGDRNIRRNFDRHTSYRSYSERSPQRRYRSPPRRRSRPRYQSRRSRSRSISNSPVRGRFRDRGRSQSPIRSPSPEGRRPPISDRLKSRLGPQSVQHSPNKGRSRSNSRSPDLSHSRSPDATPPRHRDKRISVSPSRSRSSSSSGQKGLVSYGDASPDSGAR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3206 671 CDD cyclophilin_ABH_like 41 191 - -
Dere01g3206 671 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 39 192 IPR002130 GO:0000413|GO:0003755
Dere01g3206 671 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 82 94 IPR002130 GO:0000413|GO:0003755
Dere01g3206 671 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 140 152 IPR002130 GO:0000413|GO:0003755
Dere01g3206 671 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 125 140 IPR002130 GO:0000413|GO:0003755
Dere01g3206 671 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 153 168 IPR002130 GO:0000413|GO:0003755
Dere01g3206 671 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 45 60 IPR002130 GO:0000413|GO:0003755
Dere01g3206 671 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 39 192 - -
Dere01g3206 671 Gene3D - 29 200 IPR029000 -
Dere01g3206 671 MobiDBLite consensus disorder prediction 415 438 - -
Dere01g3206 671 MobiDBLite consensus disorder prediction 282 316 - -
Dere01g3206 671 MobiDBLite consensus disorder prediction 448 474 - -
Dere01g3206 671 SUPERFAMILY Cyclophilin-like 39 193 IPR029000 -
Dere01g3206 671 MobiDBLite consensus disorder prediction 482 537 - -
Dere01g3206 671 MobiDBLite consensus disorder prediction 198 227 - -
Dere01g3206 671 MobiDBLite consensus disorder prediction 380 401 - -
Dere01g3206 671 MobiDBLite consensus disorder prediction 598 626 - -
Dere01g3206 671 MobiDBLite consensus disorder prediction 334 361 - -
Dere01g3206 671 MobiDBLite consensus disorder prediction 628 643 - -
Dere01g3206 671 MobiDBLite consensus disorder prediction 644 659 - -
Dere01g3206 671 MobiDBLite consensus disorder prediction 538 554 - -
Dere01g3206 671 MobiDBLite consensus disorder prediction 198 671 - -
Dere01g3206 671 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 34 200 - -
Dere01g3206 671 MobiDBLite consensus disorder prediction 264 278 - -
Dere01g3206 671 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 36 191 IPR002130 GO:0000413|GO:0003755
Dere01g3206 671 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 77 94 IPR020892 GO:0003755|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3206 Dere-ChrDere01 46811226 46818381 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3206 32 189 U-box Gene Family AT5G67530 47.500 4.78e-34 135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3206 01 46811226 46818381 Dere01g3206 01 46811226 46818381 ECH