Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3192 ATGGAGATTAATTATGAAAGTGAGCTCATGAATCTGAAGGACACAGAGTTAAGGTTGGGACTGCCCGGAAGGGATGAGGCAGAGAAACGTTCATGCAGTGGCTCAAGCGTTAGAAGCAATAAGAGGTATTTGAAGGAACCAAGTGAGGAGGAATCAATAAGCAACAAGAGCAACGTTTGTAACGGTTCTGAAGATCAAGATAACGCACCACCAGCAAAGGTACAAGTAGTGGGATGGCCTCCCATTCGATCTTACAGGAAGAATAGTGTACAACAAAAGAAGGGATCGCAAGAGGGTGATGGGGCTGGAAATATGTATGTGAAAGTGAGCATGGATGGTGCACCTTATTTGAGGAAGATAGATCTCAAGGTTTACAGCAGCTACCCACAACTCCTCGAGGCCTTGCAGAACATGTTCAAGTGCACTTTTGGAGAATATTCAGAAAGGGAAGGGTATGACGGATCTGAACATGCTCCTACTTACGAAGACAAGGATGGTGACTGGATGCTGGTTGGAGATGTTCCGTGGAATATGTTTATATCCTCCTGCAAGAGGCTGAGAATCATGAAAGGATCAGAGGCAAAGGGGTTGGGTGGTTTATGA 603 0.4527 MEINYESELMNLKDTELRLGLPGRDEAEKRSCSGSSVRSNKRYLKEPSEEESISNKSNVCNGSEDQDNAPPAKVQVVGWPPIRSYRKNSVQQKKGSQEGDGAGNMYVKVSMDGAPYLRKIDLKVYSSYPQLLEALQNMFKCTFGEYSEREGYDGSEHAPTYEDKDGDWMLVGDVPWNMFISSCKRLRIMKGSEAKGLGGL 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3192 200 MobiDBLite consensus disorder prediction 15 77 - -
Dere01g3192 200 SUPERFAMILY CAD & PB1 domains 102 190 - -
Dere01g3192 200 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 195 IPR003311 GO:0005634|GO:0006355
Dere01g3192 200 Pfam AUX/IAA family 49 198 IPR033389 -
Dere01g3192 200 FunFam Auxin-responsive protein 99 200 - -
Dere01g3192 200 MobiDBLite consensus disorder prediction 15 32 - -
Dere01g3192 200 ProSiteProfiles PB1 domain profile. 104 191 IPR000270 GO:0005515
Dere01g3192 200 Gene3D - 99 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3192 Dere-ChrDere01 46603423 46604248 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3192 107 197 B3 DNA Binding Superfamily AT2G46530 37.363 6.77e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere01g3192 AUX_IAA 1.2e-59 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3192 01 46603423 46604248 Dere01g3192 01 46603423 46604248 ECH