Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3190 ATGGAAGTGATAGGTGTGACGAAGGAGAAGATGCGTTTTGAGGAAACAGAGCTGAGGCTGGGGTTGCCAGGAAATGGAGGCAGCGAAGAAGTGGTTAGGAAGAGAGGATTCTCTGAGACTGAGACAGAGACAGTGAATTTGATGCTTAATCTCTCTTCAAAGGAAGCAGATCCAAGTGATAACCTCAAGACTTTGCCTAAGGAGAAGACCCTTCTGCCCTCCGATCCTGCCAAGCCTCCCGCCAAGACGCAAGTGGTGGGTTGGCCACCGGTGCGATCCTTCCGAAAGAACATATTAAAGAGCAGTACTGGAGAAGAGAGCGAGAAAGGAAGCCCTAATGGAAGCTTCGTGAAAGTAAGCATGGATGGAGCCCCTTATCTTCGCAAAGTGGACCTCAAGTTGTACAGAACTTACCAAGACCTCTATGATGCCTTAGCCAAAATGTTCAGCTCCTTCACCATAGGCAACTGTGGATCCCAAGGAATGAAGGATTTCATGAATGAGAGTAAGTTGATGAATCTCTTAAACAGCTCCGACTATGTCCCAACCTATGAAGACAAGGACGGAGACTGGATGCTTGTGGGTGATGTCCCCTGGGAGATGTTTGTTGAGTCGTGCAAACGTTTGCGTATCATGAAGGGCAAGGAGGCTATTGGACTTGCACCAAGAGCCGTGGAGAAATGCAAGAACAGAAGCTAG 699 0.4835 MEVIGVTKEKMRFEETELRLGLPGNGGSEEVVRKRGFSETETETVNLMLNLSSKEADPSDNLKTLPKEKTLLPSDPAKPPAKTQVVGWPPVRSFRKNILKSSTGEESEKGSPNGSFVKVSMDGAPYLRKVDLKLYRTYQDLYDALAKMFSSFTIGNCGSQGMKDFMNESKLMNLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAVEKCKNRS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3190 232 Gene3D - 109 226 - -
Dere01g3190 232 FunFam Auxin-responsive protein 109 224 - -
Dere01g3190 232 Pfam AUX/IAA family 15 223 IPR033389 -
Dere01g3190 232 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 219 IPR003311 GO:0005634|GO:0006355
Dere01g3190 232 ProSiteProfiles PB1 domain profile. 114 214 IPR000270 GO:0005515
Dere01g3190 232 MobiDBLite consensus disorder prediction 20 39 - -
Dere01g3190 232 SUPERFAMILY CAD & PB1 domains 110 213 - -
Dere01g3190 232 MobiDBLite consensus disorder prediction 50 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3190 Dere-ChrDere01 46595262 46597102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3190 106 222 B3 DNA Binding Superfamily AT4G23980 30.769 1.05e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere01g3190 AUX_IAA 2e-79 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3190 01 46595262 46597102 Dere01g3190 01 46595262 46597102 ECH