Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3182 ATGGCGAATCAGGTAGTCAAAGTGAGAAGGGAAACGATTGCAGCATGCATGACTTGCCCACTCTGCAATAAGTTGTTCAGGGAGGCCACCACTATATCTGAATGTCTTCATACGTTTTGCAGGAAGTGCATATATGACAAAATTACAGATGAGGAATTAGAATGCTGTCCAATTTGCAATATTGATTTGGGCTGTGTTCCACTCGAGAAATTGAGGCCAGACCACAGTTTGCAAGATGTAAGAGCTAAAATTTTCCCTTTGAAGAGAACAAAGGTGAGGGCACCAGAAGTTGTCCCCTCAGTAACATTACCAGCGAGAAGAAAGGAAAGATCACTTTCATCTTTGGTTGTCAGCACTCCCAGAGTATCAACACAGGCAACCATGACAGGCAGAAGAACAAAACCTACAAGAAAGGCTAGTGCTCTACGCTCTAGTTTTTCCATTGAAAAGCCCATTATAAAAGAGGAAGATTCAGTGGAAGATCCTCCAGAGAGTTCAAGCTCCCCTGACACCTCCAACAAGTTTACTCAGAGTACTAGACAGAGCGTGTCCCCCCATGATGGAAGCCAATCCATGCCCAAGAAGGAAACAAACAATGGGGCTGAACAGTGGGAAGCAAAATCAGATCTTTGGAAACCTTTGAATTGTTTGGTAGAGGTTGCAAGTAGGAGTAAATCTTTCAAGTCTAACATGCATGGATGTGATGCTAAACTAGAACCTATGCAAGCAAATGAGAGTTTCTCTCAAGTACAAAAATCCAAAATAAAGGACAATAAACGAAAGGCAAAAGTTGAGGATGAAAAGATAGGCACAGATCCTGTTTCTTTAGATATGGCAAAACCCAATAAATTGCGCAGAATTCGCAGGAAAAAGGAACCTGTTTTGGGTGAATCAGGCATATCACCCCAAGCTGTGCTGGATGCAAACAGTGCTAAACTGAAGAAAAGACCTGGTCCAATATGGTTCTCCTTAGTAGCATCTGAAGACCAGGAAGGAGATGCACCATTACCTCAAATCCCTGCAAGTTATTTAAGAATAAAGGATGGAAACATACCTGTCTCGTTTATCCAAAAGTACCTTGTGAAGAAATTAGATCTGACCAGTGAAGCAGAGGTTGAGATTAAATGTATGGGACAACCAGTGGTCCCTACGTTGCAACTAAATAATTTGGTTGACTTGTGGCTGCAAACAGCATCCACGTCACAGCGAATTCCCGCAGCCATTGGGTCGTCGGCAAAGGATTTTGTGATGGTCCTAGCTTATGCTCGCAAGGCCCCACCTCCTTGA 1287 0.4312 MANQVVKVRRETIAACMTCPLCNKLFREATTISECLHTFCRKCIYDKITDEELECCPICNIDLGCVPLEKLRPDHSLQDVRAKIFPLKRTKVRAPEVVPSVTLPARRKERSLSSLVVSTPRVSTQATMTGRRTKPTRKASALRSSFSIEKPIIKEEDSVEDPPESSSSPDTSNKFTQSTRQSVSPHDGSQSMPKKETNNGAEQWEAKSDLWKPLNCLVEVASRSKSFKSNMHGCDAKLEPMQANESFSQVQKSKIKDNKRKAKVEDEKIGTDPVSLDMAKPNKLRRIRRKKEPVLGESGISPQAVLDANSAKLKKRPGPIWFSLVASEDQEGDAPLPQIPASYLRIKDGNIPVSFIQKYLVKKLDLTSEAEVEIKCMGQPVVPTLQLNNLVDLWLQTASTSQRIPAAIGSSAKDFVMVLAYARKAPPP 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3182 428 MobiDBLite consensus disorder prediction 252 267 - -
Dere01g3182 428 SUPERFAMILY RING/U-box 14 83 - -
Dere01g3182 428 SMART ring_2 19 59 IPR001841 -
Dere01g3182 428 MobiDBLite consensus disorder prediction 109 206 - -
Dere01g3182 428 MobiDBLite consensus disorder prediction 245 267 - -
Dere01g3182 428 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Dere01g3182 428 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 425 IPR044807 GO:0004842
Dere01g3182 428 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Dere01g3182 428 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Dere01g3182 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 111 IPR013083 -
Dere01g3182 428 CDD RING-HC_PCGF 17 60 - -
Dere01g3182 428 MobiDBLite consensus disorder prediction 112 143 - -
Dere01g3182 428 MobiDBLite consensus disorder prediction 164 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3182 Dere-ChrDere01 46546390 46552499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3182 2 347 C3H Transcription Factor Family AT2G30580 54.857 2.10e-113 334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3182 01 46546390 46552499 Dere02g0757 02 7109121 7114865 CCT
Dere01g3182 01 46546390 46552499 Dere01g3182 01 46546390 46552499 ECH