Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3180 ATGGGTGGAGAATCTAGGGTTTTGTCTTCTTCTCTTTCACCTGTTAGACAGTTAGAGGCTAAAATGGAAGAGGTTGAAGAAGCCAACAGAGCAGCTGTTGAAAGCTGTCACAAAGTTCTAAGCTTGTTGTCTCAGCCCCAAGATCAGGTTCAGTATAGGAACTTAATGGTAGAAACTGGGGAGGCTGTGGGAAAGTTCAAGAAAGTTGTTTCTCTGCTCAATAACGGGTTGGGTCATGCAAGATTCAGGAAGTTCAGAAGACTTCAAATCCCTTTTCCTCAAAGCATCCTCTTAGACAATCCTAATTGTAAAACAAATTATCAACCCAAGAATTTGCAGCTTCCCCAGATTAGCTTTAGGGACGAGCCAATTCAGGAATTGAGAAATTCTCTCAACCTGGGAAATCCACCTTTGGAATTGAGCTCAAATGGCAAAAGTCCTCTCCACCTTTCCCAACAATCGTCTTCTCAGCACTATCTCCTTCAGCAGCAGCAGCAACAACAAGAGCAACAGCAAAGGTTATTGCTACAGCATCATCAACAACAGATGAAACACCAGGCGGAAATGATGTATCGAAGGAACAATAGTGGCATAAATCTGAATTTTGATAGCTCTAGCTGCACACCAACAATGTCATCAACTAGGTCCTTTATTTCTTCCTTGAGCATAGATGGAAGCGTAGCTAACGTGGATGGAAGTGCCTTTCATTTAATCGGAGCTCCTCTCTCTTCAGATCAGAATTCACTACAACATAAAAGAAAGTGTTCTGGCAGAGGAGATGAGGGCAGCGTCAAATGTGGGAGCAGTGCTAGATGCCACTGCTCAAAGAAGAGGAAACATAGAGTGAAGAGATCAATTAAGGTTCCTGCTATCAGCAGCAAGCTTGCAGATATACCCCCAGATGATTATTCATGGAGGAAGTATGGGCAGAAGCCAATTAAGGGCTCTCCTCACCCTAGGGGATACTATAAATGCAGCAGCATGAGAGGCTGCCCTGCTAGGAAACACGTTGAGAGGTGCCTGGAAGACCCTTCCATGCTAATTGTTACCTACGAAGGCGAGCATAACCACCCTAAAATACCAACACAATCTGCAAATGCATGA 1104 0.4402 MGGESRVLSSSLSPVRQLEAKMEEVEEANRAAVESCHKVLSLLSQPQDQVQYRNLMVETGEAVGKFKKVVSLLNNGLGHARFRKFRRLQIPFPQSILLDNPNCKTNYQPKNLQLPQISFRDEPIQELRNSLNLGNPPLELSSNGKSPLHLSQQSSSQHYLLQQQQQQQEQQQRLLLQHHQQQMKHQAEMMYRRNNSGINLNFDSSSCTPTMSSTRSFISSLSIDGSVANVDGSAFHLIGAPLSSDQNSLQHKRKCSGRGDEGSVKCGSSARCHCSKKRKHRVKRSIKVPAISSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHPKIPTQSANA 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3180 367 SMART WRKY_cls 299 359 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere01g3180 367 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 23 364 IPR044810 GO:0003700
Dere01g3180 367 ProSiteProfiles WRKY domain profile. 294 360 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere01g3180 367 Pfam Plant zinc cluster domain 252 297 IPR018872 -
Dere01g3180 367 Coils Coil 15 35 - -
Dere01g3180 367 MobiDBLite consensus disorder prediction 130 172 - -
Dere01g3180 367 FunFam WRKY transcription factor 65 283 360 - -
Dere01g3180 367 Pfam WRKY DNA -binding domain 301 358 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere01g3180 367 SUPERFAMILY WRKY DNA-binding domain 297 359 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere01g3180 367 Gene3D WRKY domain 287 361 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere01g3180 367 Coils Coil 161 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3180 Dere-ChrDere01 46518441 46520845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3180 22 364 WRKY Transcription Factor Family AT2G30590 58.201 1.39e-131 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Dere01g3180 WRKY 1.6e-26 CL0274