LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere01g3179	ATGGCTGTCGACGCCCTTCATCTTCGAAGAGATTCTCTCACCGGACCTCCCTCCGATCCTACTCCCCTCCCGCCCAAGCCTCTCCGATACGGTGGCTCCGTCCCACCCAAGGAGGCGCATTTCAGAGGCGTCCGCAAGCGTCCCTGGGGCCGATTCGCCGCCGAGATTCGTGATCCCTGGAAGAAGACGCGCAAATGGCTTGGCACCTTTGACACCGCCGAGGAGGCGGCTAGGGCCTACGATGAGGCTGCCAGGAGTCTCCGCGGGCCCAGGGCGAAGACCAACTTCGTCTACGGCGCCCTCCCTGTGACTCCGTCGGCTCCAATGTCGCCGTCGATGGTGTCTACTGCTAATGGTGGCGGTGATGGCGGCGAGATGTTCGGAAGGCGCGTGGAGTTTTGGAGGCCGCCGGTGTATTATGCGGCGGATGTGGCGGCAGGAGTGCCGGTGAGATCGGAGTACAAGGGATACAAGTTGGAGAATGTGGATGTGGTGGTGAGTGAGGAGGAGAGGAAGATGAGGAAAGAGAAGAAGCCGTTCCTGTTCGATCTTAACCAGCCACCGCCACTCTTCTGA	576	0.6094	MAVDALHLRRDSLTGPPSDPTPLPPKPLRYGGSVPPKEAHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDEAARSLRGPRAKTNFVYGALPVTPSAPMSPSMVSTANGGGDGGEMFGRRVEFWRPPVYYAADVAAGVPVRSEYKGYKLENVDVVVSEEERKMRKEKKPFLFDLNQPPPLF	191

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere01g3179	191	FunFam	Ethylene-responsive transcription factor 2	39	98	-	-
	Dere01g3179	191	MobiDBLite	consensus disorder prediction	1	42	-	-
	Dere01g3179	191	ProSiteProfiles	AP2/ERF domain profile.	40	97	IPR001471	GO:0003700\|GO:0006355
	Dere01g3179	191	MobiDBLite	consensus disorder prediction	17	31	-	-
	Dere01g3179	191	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	33	140	-	-
	Dere01g3179	191	CDD	AP2	39	96	IPR001471	GO:0003700\|GO:0006355
	Dere01g3179	191	SUPERFAMILY	DNA-binding domain	40	97	IPR016177	GO:0003677
	Dere01g3179	191	Gene3D	AP2/ERF domain	39	98	IPR036955	GO:0003700\|GO:0006355
	Dere01g3179	191	Pfam	AP2 domain	40	89	IPR001471	GO:0003700\|GO:0006355
	Dere01g3179	191	PRINTS	Ethylene responsive element binding protein signature	41	52	IPR001471	GO:0003700\|GO:0006355
	Dere01g3179	191	PRINTS	Ethylene responsive element binding protein signature	63	79	IPR001471	GO:0003700\|GO:0006355
	Dere01g3179	191	SMART	rav1_2	40	103	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere01g3179	Dere-ChrDere01	46513389	46513964	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere01g3179	24	110	AP2-EREBP Transcription Factor Family	AT3G20310	65.517	2.52e-31	112

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Dere01g3179		AP2	4.4e-14	CL0081