Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3178 ATGGCGGATGTTGAAAAAGATGTCGCACCAGGACAGCCGAAGAAGAGGACGTTCAAGAAGTTCAGTTTCAGAGGAGTTGATCTGGATGCACTCTTGGACATGTCTACTGACGAGCTTGTCAAGCTCTTCCATGCTCGCGCTCGTAGAAGGTTTCAACGCGGTTTGAAACGTAAGCCTATGGCATTGATCAAGAAGCTGCGTAAGGCGAAACGGGAGGCCCCTCCAGGTGAAAAGCCAGAGCCAGTAAGGACTCATCTCCGCAACATGATCATTGTACCTGAAATGATTGGTAGCATTATTGGTGTTTACAATGGGAAGACCTTCAATCAAGTTGAAATTAAACCAGAAATGATCGGTCACTATCTTGCTGAATTCTCAATCAGTTACAAGCCCGTTAAGCACGGAAGGCCCGGTATTGGTGCTACTCACTCCTCGAGGTTCATTCCTCTTAAATGA 456 0.4671 MADVEKDVAPGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFHARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3178 151 FunFam 40S ribosomal protein S15 8 151 - -
Dere01g3178 151 ProSitePatterns Ribosomal protein S19 signature. 104 128 IPR020934 GO:0003723
Dere01g3178 151 PRINTS Ribosomal protein S19 family signature 116 131 IPR002222 GO:0003735|GO:0005840|GO:0006412
Dere01g3178 151 PRINTS Ribosomal protein S19 family signature 84 103 IPR002222 GO:0003735|GO:0005840|GO:0006412
Dere01g3178 151 PRINTS Ribosomal protein S19 family signature 104 116 IPR002222 GO:0003735|GO:0005840|GO:0006412
Dere01g3178 151 SUPERFAMILY Ribosomal protein S19 55 135 IPR023575 GO:0003735|GO:0005840|GO:0006412
Dere01g3178 151 Hamap 30S ribosomal protein S19 [rpsS]. 47 140 IPR002222 GO:0003735|GO:0005840|GO:0006412
Dere01g3178 151 Gene3D 30s Ribosomal Protein S19; Chain A 9 151 IPR023575 GO:0003735|GO:0005840|GO:0006412
Dere01g3178 151 NCBIfam 30S ribosomal protein S19 18 151 IPR005713 GO:0003735|GO:0006412|GO:0015935
Dere01g3178 151 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 11 151 IPR002222 GO:0003735|GO:0005840|GO:0006412
Dere01g3178 151 Pfam Ribosomal protein S19 49 134 IPR002222 GO:0003735|GO:0005840|GO:0006412
Dere01g3178 151 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 8 151 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3178 Dere-ChrDere01 46507852 46509620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3178 1 151 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 86.755 2.76e-90 257