Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere01g3177 | ATGGCGACCGAAGAGCCTGTCATAGCCGTGGAATCGGCACCAGAACCAGCTAACGCTGAGCAAGCCGAGGTGGATCAGGCCGCCCAGGGTGGTGGCAAGGCCAAGAAAGCTAAGGAGCCAAAACCCAAAAAAGCTGCTGCTCCTAAATCCCGAAATCCGCCTTCGCATCCTCCCTATGAAGAGATGATCAAGGACGCGATTGTGACCCTGAAGGAGAAGACTGGTTCCAGTCAGTATGCTATTACGAAGTTTATCGAAGAGAAGCACAAGCAACTTCCGTCCAACTTCAGGAAGCTATTGCTCTTCCATTTGAAGAAGCTTGCGGCTTCTGGAAAGATTGTTAAAGTGAAGGGATCCTTTAAGCTTCCACCTGCAAAGTCGTCGGCACCGAAACCGTCTGGGACGACTGCTCCGGCGAAGAAAAAGGCTGCAGCTGCTAAGCCTAAACCCAAGCCTAAGCCGAAGCCGAAGCCGAAGCCAAAGGCGAAGCCAGCTTCCAAGCCCAAGGAAACGAAGGCTACCAAGGTGGCTGCCAAAGCGCCTGCTAAGGCTAAAGCAGCTGCCAAGCCCAAGCCTAAGGCGGCTACTAAGCCCAAAGCTGCTCCTGCTAAACCCAAGGCTGCCGCCACCAAGCCAAAAGCCGCTGCTAAGCCGAAGGCAGCGGCCAAGCCAAAGTCCAAGGAGAGGCCTGCTAAGGCTGCAAGGACATCGACGAGGACAAGTCCTGGGAGAAAAGCACCTGTTCCTAAGCCGGCCGCAAAGAAGGCCGCAGCAGCCAAGAAGGCTCCCGCTAAAAGCGTTAAGCCAAAGAGTGTAAAGTCGCCGGCAAAGAAGGCTCCTGCGAAGAGAGGAAAGAAGTGA | 861 | 0.547 | MATEEPVIAVESAPEPANAEQAEVDQAAQGGGKAKKAKEPKPKKAAAPKSRNPPSHPPYEEMIKDAIVTLKEKTGSSQYAITKFIEEKHKQLPSNFRKLLLFHLKKLAASGKIVKVKGSFKLPPAKSSAPKPSGTTAPAKKKAAAAKPKPKPKPKPKPKPKAKPASKPKETKATKVAAKAPAKAKAAAKPKPKAATKPKAAPAKPKAAATKPKAAAKPKAAAKPKSKERPAKAARTSTRTSPGRKAPVPKPAAKKAAAAKKAPAKSVKPKSVKSPAKKAPAKRGKK | 286 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere01g3177 | 286 | CDD | H15 | 53 | 132 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Dere01g3177 | 286 | MobiDBLite | consensus disorder prediction | 116 | 286 | - | - | |
| Dere01g3177 | 286 | PRINTS | Histone H5 signature | 176 | 193 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Dere01g3177 | 286 | PRINTS | Histone H5 signature | 198 | 217 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Dere01g3177 | 286 | PRINTS | Histone H5 signature | 141 | 155 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Dere01g3177 | 286 | PRINTS | Histone H5 signature | 42 | 63 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Dere01g3177 | 286 | PRINTS | Histone H5 signature | 69 | 86 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Dere01g3177 | 286 | MobiDBLite | consensus disorder prediction | 271 | 286 | - | - | |
| Dere01g3177 | 286 | SMART | h15plus2 | 53 | 119 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Dere01g3177 | 286 | MobiDBLite | consensus disorder prediction | 144 | 162 | - | - | |
| Dere01g3177 | 286 | FunFam | Histone H1 | 50 | 135 | - | - | |
| Dere01g3177 | 286 | Gene3D | - | 51 | 129 | IPR036388 | - | |
| Dere01g3177 | 286 | SUPERFAMILY | "Winged helix" DNA-binding domain | 52 | 132 | IPR036390 | - | |
| Dere01g3177 | 286 | PANTHER | HISTONE H1 | 34 | 265 | - | - | |
| Dere01g3177 | 286 | Pfam | linker histone H1 and H5 family | 56 | 122 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Dere01g3177 | 286 | MobiDBLite | consensus disorder prediction | 32 | 46 | - | - | |
| Dere01g3177 | 286 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
| Dere01g3177 | 286 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 55 | 124 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere01g3177 | Dere-ChrDere01 | 46490057 | 46491014 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere01g3177 | 50 | 135 | Single Myb Histone (SMH) Gene Family | AT1G72740 | 34.884 | 1.07e-08 | 53.1 |