Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3171 ATGCTGCGAGAAGCTATGACGGGCTATGATGTGCATAAGTTGTGTTTTGAACTATGAGAGATTTCACGTATATGGAAAGCGAAGTCTAGAAATCTCGAGCAGCTAAACGGCCTGTCCTGGAGGAAGTTGATTTTTTTGAAAATAGTTTACTTTAAAGGTTCCTTAACTGACAAGAAGACATACAGAAAACAAGAACCTCAATTCTTTGCCTTGCCGACCCAAGAACAAGCAGGTAGCTTCCAGCTGGGATATTTGACCCAAAAGAGCCAATTTCACCTGCTGGCTTTTCAAAATTGCTGTTTGACGACTCTGCACGGCCTCCGCATCCAAACGCCATTTCGCTCTCCGTGCACCGACATTTTCTTGAATCTTTCAAAGGTAGCTGGAATGTCTGGGGAAGGTTTTGATGGACAGGATGCAGGATATGTGCCTGAGAACCCCAATTTTCCACAAAATCATTCTGATGTACATGATGCAGGAGTGATTGATAATGCGGGGTTTCCTCAACAGGAGTCTGAAGAACATGATGCAGGCAATGTGGTTGAGGAATACAATCCTCCAGAAAATCATTTGGATGGAATTGATGCTGGAGATTTGCCCAGAAATTCAGATTCTCCACAAAAGCATATTGATGAACATCATGATGTAGGAGATATGCCTGAGAGCTTTGATTCTCTGCAGAAACAGGAACATGACGTAGATTCAAAAGGAAATGAAATAAAACGGTGGCCAGGGTGGCCTGGAGAGAATGTATTCAGGATGTTGGTTCCTGTGCAGAAGGTTGGCAGTATTATTGGTCGCAAGGGTGAATTTATCAAGAAAATTACTGAAGAGACAAAAGCTCGTATTAAAATACTTGATGGTCCCCCTGGAACCTCCGAGAGAGCTGTAATGGTTTCTGCAAAAGAGGAGCCAGATCGTGCCATACCACCTGCTGTGGATGGCTTGTTAAGGGTTCATAAACAAGTTGTCAATGTTGATCGCGATCCTGCAGATAGCACATCAGCTGCTGGGCGCACAGTTGTGACAAGACTTCTTGTAGCAGATACTCAAGCAGGAAGCTTGATTGGGAAGCAGGGTTCCACTATAAAATCCATTCAAGATACTTCTGGTTGTACCATACGTGTTCTTGGATCAGAACACCTGCCAGTTTTTGCTCTACGTGATGATAGTGTTGTTGAAATACAAGGAGAATCTGCTGGAGTTCACAAGGCAGTTGAACTAATTTCAACTCATCTACGAAAGTTCTTGGTGGACCGTAGCATAGTTGGAGTATTTGAAACACAGATGCAATCGCCAGATGTTCGAGTTAACCAGAATGTGCCACCACACCAACCATGGGGTCCTCCTCCTCAAGGGTTTCCAGCACCATCTGCTGGTGGACCTCCTTTTGCTCCTAATCATCAATATATGCCACCTTCACATCACTATGATAACTATTATCCACCTGCTGACCTGCCTCCTATGGACAAGCACCTTCATCAGGGACCACCTGCATATGGAAGGGATGCTTCTATGGCATCCAGTGTACAACCACAACAATCTGTTGTGACTAAGGTTACACAGCATATGCAAATTCCTCTGTCATATGCAGATGCTGTTATTGGAACATCAGGTGCAAATATCAGCTACATTCGCCGTGCTAGTGGAGCAAGTATTACAATTCAGGAGACAAGGGGTGTGCCAGGGGAGATGACTGTTGAGATAAGTGGGACTGCTTCACAAATACAGACTGCACAACAGCTGGTTCAGAATTTCATGGCTGAAGCTGCAAGCTCGGCACAGGATCACATGGGGGGTTCAATTGGCCAAGGCTACAATTCATATCCTGCTAATGCTCCTGTTTATGCATCGCCACCCTCAAGCGCTGGTGGCCATACAGGCCATGCGCCTGCTGCAGATTATGGTCCTGTATATGGCACCAATTATGGCTATTAA 1938 0.4499 MLREAMTGYDVHKLCFELXEISRIWKAKSRNLEQLNGLSWRKLIFLKIVYFKGSLTDKKTYRKQEPQFFALPTQEQAGSFQLGYLTQKSQFHLLAFQNCCLTTLHGLRIQTPFRSPCTDIFLNLSKVAGMSGEGFDGQDAGYVPENPNFPQNHSDVHDAGVIDNAGFPQQESEEHDAGNVVEEYNPPENHLDGIDAGDLPRNSDSPQKHIDEHHDVGDMPESFDSLQKQEHDVDSKGNEIKRWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTSERAVMVSAKEEPDRAIPPAVDGLLRVHKQVVNVDRDPADSTSAAGRTVVTRLLVADTQAGSLIGKQGSTIKSIQDTSGCTIRVLGSEHLPVFALRDDSVVEIQGESAGVHKAVELISTHLRKFLVDRSIVGVFETQMQSPDVRVNQNVPPHQPWGPPPQGFPAPSAGGPPFAPNHQYMPPSHHYDNYYPPADLPPMDKHLHQGPPAYGRDASMASSVQPQQSVVTKVTQHMQIPLSYADAVIGTSGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQTAQQLVQNFMAEAASSAQDHMGGSIGQGYNSYPANAPVYASPPSSAGGHTGHAPAADYGPVYGTNYGY 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3171 645 ProSiteProfiles Type-1 KH domain profile. 249 316 - -
Dere01g3171 645 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 510 590 IPR036612 GO:0003723
Dere01g3171 645 MobiDBLite consensus disorder prediction 443 469 - -
Dere01g3171 645 CDD KH-I_PEPPER_rpt2_like 342 414 - -
Dere01g3171 645 SMART kh_6 339 414 IPR004087 GO:0003676
Dere01g3171 645 SMART kh_6 248 321 IPR004087 GO:0003676
Dere01g3171 645 SMART kh_6 518 588 IPR004087 GO:0003676
Dere01g3171 645 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 241 608 - -
Dere01g3171 645 ProSiteProfiles Type-1 KH domain profile. 519 583 - -
Dere01g3171 645 CDD KH-I_PEPPER_rpt1_like 249 317 - -
Dere01g3171 645 MobiDBLite consensus disorder prediction 137 222 - -
Dere01g3171 645 Gene3D K Homology domain, type 1 506 595 IPR036612 GO:0003723
Dere01g3171 645 Gene3D - 249 419 - -
Dere01g3171 645 CDD KH-I_PEPPER_like_rpt3 519 587 - -
Dere01g3171 645 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 336 423 IPR036612 GO:0003723
Dere01g3171 645 MobiDBLite consensus disorder prediction 194 222 - -
Dere01g3171 645 MobiDBLite consensus disorder prediction 436 505 - -
Dere01g3171 645 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 241 304 IPR036612 GO:0003723
Dere01g3171 645 ProSiteProfiles Type-1 KH domain profile. 340 409 - -
Dere01g3171 645 Pfam KH domain 252 304 IPR004088 GO:0003723
Dere01g3171 645 Pfam KH domain 343 410 IPR004088 GO:0003723
Dere01g3171 645 Pfam KH domain 521 584 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3171 Dere-ChrDere01 46442921 46453220 Dispersed/Wgd