Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3156 ATGGAATTCAGGTATGCAGAAGAGTCAAAGAGCTGGAGCGAAGAAAGTGATGATCGATCGGAGCAAAATGATGATAGAGGAAGTGGGAAATCCTACGAGTGTGTGTTTTGCAAGAGAGGCTTCACCACAGCACAAGCTCTTGGCGGACACATGAATATACACAGGAAAGATAGAGCCAAGTCCACCAAGCCCAATTTTCCTGCTTCCACTTCAACCAAGGTGGTTGATGAGAATGAGATAAACTACGGAATTTCAAGCCATCGACCTGGGAATTACTATTCTACCGAGATAGATAACAGTAATTATAATTACCCTCAACCCCATATTTCTTTTCCTGCTGTGCCTTCAAATATACAGTACAGTGAGGTCTTGTGTGTACAAAATCAAAGGGATCGGGACGTGTTTGGAGGAGATTGGAGGAGCGGTCTGAGTTTGTATTCGAATCCATTATGTGTACGTGATAACAAAGAGAAGATAGAAGATAGCAGCGAGGAGGATGGGCTGGATTTGGAGCTTCGATTGGGTTATCATCCCTAG 537 0.4376 MEFRYAEESKSWSEESDDRSEQNDDRGSGKSYECVFCKRGFTTAQALGGHMNIHRKDRAKSTKPNFPASTSTKVVDENEINYGISSHRPGNYYSTEIDNSNYNYPQPHISFPAVPSNIQYSEVLCVQNQRDRDVFGGDWRSGLSLYSNPLCVRDNKEKIEDSSEEDGLDLELRLGYHP 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3156 178 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
Dere01g3156 178 MobiDBLite consensus disorder prediction 1 31 - -
Dere01g3156 178 Gene3D Classic Zinc Finger 7 86 - -
Dere01g3156 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Dere01g3156 178 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Dere01g3156 178 PANTHER OS07G0101800 PROTEIN 7 177 - -
Dere01g3156 178 Pfam C2H2-type zinc finger 32 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3156 Dere-ChrDere01 46153791 46154327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3156 30 178 C2H2 Transcription Factor Family AT4G17810 34.211 1.37e-14 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere01g3156 zf-C2H2_6 1.5e-05 CL0361