Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3150 ATGGCTTGTTCTGGAAGTAATACTAGTGGAAATGGAAGTGGAGGGTCTGGGTCTCCTTGCGGGGCATGCAAGTTTCTGAGAAGAAAGTGTGCAGCTGATTGTATATTTGCTCCTTATTTCTGCTCCGACCAGGGCCCTGCTAGATTTGCAGCCATACACAAGGTGTTTGGGGCTAGTAATGTTTCCAAATTGCTATTGCATATGCCTGCTCATCATCGTTGTGAGGCTGTCCTCACTATTGCCTATGAAGCCCAAGCTCGTATTAAAGATCCTGTTTATGGCTGTGTCTCCCACATTTTTGCTTTACAACAACAGGTGGCATGCTTGCAAGCACAACTGATGCAAGTGAAGGCGCAGCTGGCGCAGAAGAGCACAGAGAATGAAGAGTACTGGGGAGGGAATGGTGGTGCGCAAGTAATGAATCCAATTTATGGCAGTAATTACACCAACATGAACCCTATATCTCCTCAGAGTTCTCTTGACTCAATTGACCACACAAGCCACCATGATGGATTAATGAGCATGCAGCAAGATGATTTCACCTTCCAGCAACCTTATTCTAAGAAAAGGTCATATGATAGCTATGACTTGGGGGAGCTTCAAGAACTGGCCCTCAGGATGATGAGAAACTAG 633 0.4581 MACSGSNTSGNGSGGSGSPCGACKFLRRKCAADCIFAPYFCSDQGPARFAAIHKVFGASNVSKLLLHMPAHHRCEAVLTIAYEAQARIKDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAQKSTENEEYWGGNGGAQVMNPIYGSNYTNMNPISPQSSLDSIDHTSHHDGLMSMQQDDFTFQQPYSKKRSYDSYDLGELQELALRMMRN 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3150 210 Pfam Lateral organ boundaries (LOB) domain 19 117 IPR004883 -
Dere01g3150 210 PANTHER LOB DOMAIN CONTAINING PROTEIN 15 150 - -
Dere01g3150 210 Coils Coil 99 126 - -
Dere01g3150 210 ProSiteProfiles LOB domain profile. 18 120 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3150 Dere-ChrDere01 46120049 46121149 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3150 8 210 AS2 family AT2G42430 54.508 1.38e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere01g3150 LOB 3.2e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3150 01 46120049 46121149 Dere01g3150 01 46120049 46121149 ECH