Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3149 ATGACTGGGTCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGACGGAAATGCGTGAGAGGGTGTGTTTTTGCACCTTATTTTTGCCATGAACAAGGTGCTACCCATTTTGCAGCCATTCATAAGGTTTTTGGTGCAAGCAATGTCTCTAAGCTTCTCGCTCAGCTCCCTGTAAGTGACCGTTGTGAAGCTGCAGTGACAATCTCATATGAAGCTCAAGCTAGACTTCAGGATCCTATTTACGGCTGTGTCTCCCACATTTTCGCTCTCCAACAACAGGTGGTTAATTTACAAGCACAGCTAGCTTATCTGAAGGAGCAAGCAGCTCAGAGCAATATTCTAAATGTCTCTGCCACTGAAAACCCTAAACCTACTACTTTCTCTGATGACGATCTTCAAAAGTGGTTCCAGGCGGAAAATCCCAACACGGGGACACAATTTCTTCCTAACTCATATGATATTAATTCCTTAGCAATACAGTACCATGGAAATTGTACGACTCCTTTCATGAACCCAAACGCTACTAGGAATTCTGAAAATTCAGGAACCATGGAAGAAAGTGTTTCATTTTCGAGCTTCCACGAGGAGACTAATTGTAACTCTATGTCCTATGACATGCAAGCAAGCAGTAGGCAGTGGGGCTTTCATGAAGTGGATGACCTTCAGTCGGTGGCTTTTGCTTACAGTAGATGA 693 0.4387 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAQLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQSNILNVSATENPKPTTFSDDDLQKWFQAENPNTGTQFLPNSYDINSLAIQYHGNCTTPFMNPNATRNSENSGTMEESVSFSSFHEETNCNSMSYDMQASSRQWGFHEVDDLQSVAFAYSR 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3149 230 Coils Coil 87 107 - -
Dere01g3149 230 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 195 - -
Dere01g3149 230 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Dere01g3149 230 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3149 Dere-ChrDere01 46110854 46111646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3149 7 228 AS2 family AT3G58190 52.402 6.13e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere01g3149 LOB 4.1e-36 No_clan