LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere01g3142	ATGCCTACATCCTCTCGAGTCTCGAGTGAACTCGCGGGACCTAACGGGTCATTTTGGCGGGAATCCGACGTGGCATCCATCCACGCGAGGAGCAGCTCTAATTTCCCGCCCAAAAGCCCTAATATATATTCTAATCAAAGCTGCATCTCCTGCTCAATCTTCATTTCTGATAGAAGCCCCAGATCAGATCTGCTTGGCGAAATATCCATTTATAACAGGATGAGCTCCTCAGAGTTTATACATAAGAAGCCCCATCTCCGCCACTCAGCCTCCAAATCCCAAACTCCGGACGATATTTCGTTGAGCTCCAAAACCCCAGAGAAGGCCCCACAGCTCTCACACCGTTCGCGAAACCGCGGCGTTGCGCTCTCCATCAGAGATGTCAGGAAGGTCGCTGAAAGCCTTCAGGGACAGAATCGCCAGCAGCAAAATCATGGTCAAACGGAGCAGACCAAATCTGTCAGAAGAAAGATTGCAACGTCTTTCGCCCAAATCTCACCCCGTAAACCCAAGACCTCTATTGATGAGCCCGTCAAACTGCCGGAAAAGTATGAAATTTTGGGTGAGTTCTTCGACAGCTTGTATAGCTCGATTCGATTGTTGCATTTGAAAGGTTCGACAACAACTTTCACGAATCTCTGCCCAAAGATAGAATGTTTAACTGATAGGAGGTTTACACATGGTCATCTGGCCCAGTTGAAACATATCTTACCTGAGGCAGTTGTTATAAAGAAGGTACTTAGGTTTGATGAACGAACAAGTTGTATGAAGCCAGACCTCCATGTTACAATAAATCCTGATGCAGTAGAATCTGATGCAAAGTTCTCTGAGGGTGGGAGTGTGTGCGTGAGGAAGCTATTTCGGACACGGCTTAGAGATTTTTATAAATCGCATCCTGAGGGTGATGAAATTCCAGAAGAAACACTGCCTGAGCCATTCAATCACCCTACGCAAGACCGTCTTTTGGAAACATTGAGAACTTCCTCCTCATCATTTGCTACAGTGGCTTCATGTGATGCAGTCGCACCTCATCATCCAGCTGCAGCACCCGCATACATGCCAGGCAATGCCGTTGCAGACAATTCAGAGCCTGCTAAGAAAGAAGGAAACTCGTCAGTACCTGTTGAGATGTCAATTGAAGCACACCATCAGCAACCAGCAGTAGCCGCTCATGTGTCTCAATCTTTTAGAAGGCGCTTTTCTCAGAAATCCATCAGAAATGATGCAGATGATGCACACCGAAAGTTAACATCAGGTTCATTCAATCCTCAATCTGTTCCAGCTTCAGAGTCAAGCGTGGAGAAAACTTCATCAGATGTAGATACTACATCTCATCCTAATATGTGCCCAACAATATGTGCCTCTCCAGCTAAACTCAAATCATCTGGTGCTTCACTCGCCACTCCAAATAAACTTGCTTCTACTCCATCTAGGCTGATGACTGCTACACCTTCATTGCCTCCGCCTAAGAGATGTTATATGAGCCCTGATGACAGCTCTTCCAGCTCACGAAACATATTGGTTAGGCGTCCTACTAGTTTGAAGTCATTGAACTTTGACACTCCAGTGAAAAATCAGACGACAGACATTGAAGCTGATGATGCTTGCGGCTTATCAATTGATGATGATATTTTTTATATTCTCCCTGAGAATCTTCTCCAATCAATTAAAGAAAAGGAGAGAGTGGCAATGGAGGAAAGAAATCCTGCAATCTCACAAGCAAAGAGACGGCAAAAATTGATTGCCAGCCTCCCTAAGCTATTCAACATGATTCATCTCTTGATTCATTCAAGTAATCGTTATGTCATCACAAAAGAGGAACTTCTAAGCAAGATAATCTCAAGCCATTGTGATATTGTTGACCGAAGAGAAGTTGAGGAGCAGCTGAATTTGTTGCTAGAACTAGTTCCAGAATGGATTTCTGAGAAGTTGGCATCTAGTGGGGATTTGCTATTCTGCATAAATAAAATGTCAAACCCTGAGAGCATACGATCACAGCTTGAGGAAGCAAAGTGA	2016	0.4459	MPTSSRVSSELAGPNGSFWRESDVASIHARSSSNFPPKSPNIYSNQSCISCSIFISDRSPRSDLLGEISIYNRMSSSEFIHKKPHLRHSASKSQTPDDISLSSKTPEKAPQLSHRSRNRGVALSIRDVRKVAESLQGQNRQQQNHGQTEQTKSVRRKIATSFAQISPRKPKTSIDEPVKLPEKYEILGEFFDSLYSSIRLLHLKGSTTTFTNLCPKIECLTDRRFTHGHLAQLKHILPEAVVIKKVLRFDERTSCMKPDLHVTINPDAVESDAKFSEGGSVCVRKLFRTRLRDFYKSHPEGDEIPEETLPEPFNHPTQDRLLETLRTSSSSFATVASCDAVAPHHPAAAPAYMPGNAVADNSEPAKKEGNSSVPVEMSIEAHHQQPAVAAHVSQSFRRRFSQKSIRNDADDAHRKLTSGSFNPQSVPASESSVEKTSSDVDTTSHPNMCPTICASPAKLKSSGASLATPNKLASTPSRLMTATPSLPPPKRCYMSPDDSSSSSRNILVRRPTSLKSLNFDTPVKNQTTDIEADDACGLSIDDDIFYILPENLLQSIKEKERVAMEERNPAISQAKRRQKLIASLPKLFNMIHLLIHSSNRYVITKEELLSKIISSHCDIVDRREVEEQLNLLLELVPEWISEKLASSGDLLFCINKMSNPESIRSQLEEAK	671

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere01g3142	671	MobiDBLite	consensus disorder prediction	93	109	-	-
	Dere01g3142	671	FunFam	CDT1-like protein a chloroplastic	541	671	-	-
	Dere01g3142	671	MobiDBLite	consensus disorder prediction	134	155	-	-
	Dere01g3142	671	SUPERFAMILY	"Winged helix" DNA-binding domain	171	313	IPR036390	-
	Dere01g3142	671	MobiDBLite	consensus disorder prediction	352	373	-	-
	Dere01g3142	671	CDD	Cdt1_c	547	668	IPR032054	-
	Dere01g3142	671	MobiDBLite	consensus disorder prediction	417	444	-	-
	Dere01g3142	671	SMART	CDT1_2	180	311	IPR014939	-
	Dere01g3142	671	MobiDBLite	consensus disorder prediction	133	155	-	-
	Dere01g3142	671	MobiDBLite	consensus disorder prediction	404	444	-	-
	Dere01g3142	671	Pfam	DNA replication factor CDT1 like	180	298	IPR014939	-
	Dere01g3142	671	CDD	Cdt1_m	171	314	IPR014939	-
	Dere01g3142	671	PANTHER	DNA REPLICATION FACTOR CDT1	83	671	IPR045173	GO:0003677\|GO:0030174\|GO:0071163
	Dere01g3142	671	MobiDBLite	consensus disorder prediction	82	120	-	-
	Dere01g3142	671	Gene3D	-	543	671	IPR038090	-
	Dere01g3142	671	MobiDBLite	consensus disorder prediction	476	506	-	-
	Dere01g3142	671	Pfam	DNA replication factor Cdt1 C-terminal domain	551	643	IPR032054	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere01g3142	Dere-ChrDere01	46055442	46059068	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere01g3142	454	669	Core DNA Replication Machinery Family	AT2G31270	53.778	1.20e-59	208

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dere01g3142	01	46055442	46059068	Dere02g0790	02	7464754	7470921	CCT
	Dere01g3142	01	46055442	46059068	Dere01g3142	01	46055442	46059068	ECH