Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3134 ATGAAAGTGGAACCCTCAGTCTCTAACCTCCGTTTTTTTGTTATGGGGCAGGTAGCATCGACGTTTGAAACCCACAAAAAGATGGAACAAGAATCAAAGAAAAGGGTCAAGGAGGATGAACCTAAAGAAACAAAGTTCAGAGGAGTGCGGAGGCGGCCATGGGGAAAGTTTGCTGCAGAGATTCGAGACTCTAACAGGCATGGAGTCCGCTTGTGGCTTGGGACTTTCAACACTGCTCAGGAAGCAGCAAGAGCCTACGATCGTGCTGCTTTTGACATGAGAGGCCCTTCGGCCATTCTCAACTTCCCAGAAGAACATGGTTTAAGCAATGCGGCAACTCCTAATTACCCCTGTTCCTCGTCTTCTTCATCCTCGTCTTCAACGCTTGAACCCCAGCGTGGAAAACAAGTTTTTGAATTCGAGTGTTTGGATGATAAATTATTAGAGGAACTTCTTGATTATGACGAGGATGCCATCAAGAAGGAGTAA 489 0.4622 MKVEPSVSNLRFFVMGQVASTFETHKKMEQESKKRVKEDEPKETKFRGVRRRPWGKFAAEIRDSNRHGVRLWLGTFNTAQEAARAYDRAAFDMRGPSAILNFPEEHGLSNAATPNYPCSSSSSSSSSTLEPQRGKQVFEFECLDDKLLEELLDYDEDAIKKE 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3134 162 FunFam Ethylene-responsive transcription factor 2 44 104 - -
Dere01g3134 162 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Dere01g3134 162 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Dere01g3134 162 PANTHER DNA-BINDING DOMAIN 29 153 IPR044808 GO:0003700|GO:0009873
Dere01g3134 162 SUPERFAMILY DNA-binding domain 45 104 IPR016177 GO:0003677
Dere01g3134 162 Gene3D AP2/ERF domain 44 104 IPR036955 GO:0003700|GO:0006355
Dere01g3134 162 MobiDBLite consensus disorder prediction 113 132 - -
Dere01g3134 162 Pfam AP2 domain 44 95 IPR001471 GO:0003700|GO:0006355
Dere01g3134 162 CDD AP2 44 104 IPR001471 GO:0003700|GO:0006355
Dere01g3134 162 SMART rav1_2 45 109 IPR001471 GO:0003700|GO:0006355
Dere01g3134 162 ProSiteProfiles AP2/ERF domain profile. 45 103 IPR001471 GO:0003700|GO:0006355
Dere01g3134 162 MobiDBLite consensus disorder prediction 28 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3134 Dere-ChrDere01 45958251 45959452 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3134 42 156 AP2-EREBP Transcription Factor Family AT3G23230 61.983 1.98e-40 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere01g3134 AP2 3e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3134 01 45958251 45959452 Dere01g3134 01 45958251 45959452 ECH