Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3133 ATGGAAGGGAAGAGAGGTGGGAGTGGAAAATCAGGAGGAGGGTACAGAGGGATTCGCAAGAGGCCATGGGGTAAGTTCGCAGCAGAGATACGAGACCCTACCAGAAATGGGATGCGACTGTGGCTGGGAACCTTCGACACAGCAGAGCAGGCTGCAAGGGCTTATGATGTTGCTGCTTTTAGATTCAGGGGCCACAAGGCCATTCTCAACTTCCCTGATCACTATTACCAATTTCATGGTGACCACAATCTAATCTCTTTCACCACTTCTTCTTCTTCTTCTTCTGCAGCTTCTGCTTCGTACTCCCTTGCTGCACCCACTAGCGAGGGCATGGTGAAACAGGGTTCGCCAGAGCTGAAACAGGCCCGTCCCTTGGAGTTGGAATACTTGGATGGCAAGCTGTTGGACGATCTTCTTCAGCCACCTCATGATCCCAACACTAGTTAG 447 0.5123 MEGKRGGSGKSGGGYRGIRKRPWGKFAAEIRDPTRNGMRLWLGTFDTAEQAARAYDVAAFRFRGHKAILNFPDHYYQFHGDHNLISFTTSSSSSSAASASYSLAAPTSEGMVKQGSPELKQARPLELEYLDGKLLDDLLQPPHDPNTS 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3133 148 Pfam AP2 domain 14 65 IPR001471 GO:0003700|GO:0006355
Dere01g3133 148 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Dere01g3133 148 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Dere01g3133 148 PANTHER DNA-BINDING DOMAIN 14 109 IPR044808 GO:0003700|GO:0009873
Dere01g3133 148 ProSiteProfiles AP2/ERF domain profile. 14 72 IPR001471 GO:0003700|GO:0006355
Dere01g3133 148 SMART rav1_2 14 78 IPR001471 GO:0003700|GO:0006355
Dere01g3133 148 FunFam Ethylene-responsive transcription factor 2 14 73 - -
Dere01g3133 148 CDD AP2 18 74 IPR001471 GO:0003700|GO:0006355
Dere01g3133 148 Gene3D AP2/ERF domain 14 73 IPR036955 GO:0003700|GO:0006355
Dere01g3133 148 SUPERFAMILY DNA-binding domain 14 73 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3133 Dere-ChrDere01 45956413 45956859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3133 15 139 AP2-EREBP Transcription Factor Family AT3G23230 54.400 8.35e-37 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere01g3133 AP2 8.1e-14 CL0081