Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3129 ATGTATTTTGATTCTGGAATGGATTACCACTCTTCCTTGTCGTGGGAAGAGTTATATTCATTGAGCAACATGGACTACAGTCTTCCATTGAGCTCCAGTACTGAAGTCACAGACAAGGCAAAAATGAAAGAACTATCCTGGGAATCCAATTCTTCATCTTCATCCTCCACCGGAGGAGTAATGGAGTGTTCACAATCACAAGAACTCGCCTCCCAACAACCATCGCCACCCAAAAGAGAGAAGAGGCCGTACAGAGGAGTGAGGAGGCGGCCGTGGGGGAAATTCGCGGCGGAGATAAGGGACTCCACCAGAAATGGGGTTCGACTGTGGATTGGAACATTTGACACTGCCGAGGCTGCTGCTTTGGCTTACGATCAAGCTGCTTTCCTGACACGTGGGTCACTGGCCAAGCTTAATTTCCCAGAGCATGTGGTGAGGGAGTCTCTTGCAGAGTTTGGATGTAAGGGTGGTTGCTCTTCCTCGCCCTTGTTGGAACTCAAAAGGAGGCACACCTTGAGAACGACCAAGTCCAAACCTAATGCGAACAGAAAGATGAAAGGGAATTGCAAGGAGGCGGAGTTAAAGGGCAATGAAAATGTGTTGGTTTTGGAGGACTTGGGTGCTGAATATCTTGATCAACTTCTCACCTATTCGTCTCACATTACTGCTGCTTCTTGGAGCTGA 684 0.4825 MYFDSGMDYHSSLSWEELYSLSNMDYSLPLSSSTEVTDKAKMKELSWESNSSSSSSTGGVMECSQSQELASQQPSPPKREKRPYRGVRRRPWGKFAAEIRDSTRNGVRLWIGTFDTAEAAALAYDQAAFLTRGSLAKLNFPEHVVRESLAEFGCKGGCSSSPLLELKRRHTLRTTKSKPNANRKMKGNCKEAELKGNENVLVLEDLGAEYLDQLLTYSSHITAASWS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3129 227 SUPERFAMILY DNA-binding domain 84 142 IPR016177 GO:0003677
Dere01g3129 227 CDD AP2 84 143 IPR001471 GO:0003700|GO:0006355
Dere01g3129 227 Gene3D AP2/ERF domain 83 143 IPR036955 GO:0003700|GO:0006355
Dere01g3129 227 PANTHER DNA-BINDING DOMAIN 43 216 IPR044808 GO:0003700|GO:0009873
Dere01g3129 227 MobiDBLite consensus disorder prediction 44 87 - -
Dere01g3129 227 SMART rav1_2 83 147 IPR001471 GO:0003700|GO:0006355
Dere01g3129 227 MobiDBLite consensus disorder prediction 46 74 - -
Dere01g3129 227 Pfam AP2 domain 84 129 IPR001471 GO:0003700|GO:0006355
Dere01g3129 227 FunFam Ethylene-responsive transcription factor 2 82 142 - -
Dere01g3129 227 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Dere01g3129 227 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Dere01g3129 227 ProSiteProfiles AP2/ERF domain profile. 83 141 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3129 Dere-ChrDere01 45863487 45864170 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3129 64 215 AP2-EREBP Transcription Factor Family AT3G23240 53.896 5.29e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere01g3129 AP2 9.3e-13 CL0081