LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere01g3125	ATGTCTTTCCCTTTCTTTGAGCACCCATGCCCAGATTGGGACCTGTGGCAGGACCCCTCTGATATGTTGCTCGAATCCTTCTCAAGCAACCAAGTTTATGAAGATCCAATCTATGATTTTCTTTCCTTCGATATGGTGGACAGGACTAGCATGGATCCACAGGCACCATCCCAGGGAAAGCAACCAGATGGGAGTTCGAAGGCCAAGGAAGTGAAGAGCAGTAAAGAGAAAACATACATAGGGGTGAGGAAGAGACCGTGGGGAAAATTTGCAGCAGAGATCAGAGACACCACCAGAAATGGGACTCGGGTTTGGCTGGGAACGTTCGAGAGTGCAGAGGAAGCTGCTCTAGCCTATGACCAAGCTGCATTCAGCATGAGAGGCTCCACTGCTGTTCTCAATTTTCCGGTGGGGAGGGTGAAGGAGTCTCTGCAAGACATCAAGTACGGTTGTCGCAAAGGGTGTTCTCCTGCTTTAGCACTCAAAGAGAAGCACTACCTCCAGAGAAAATTAATGTCATCAAAGGCCAAGAAAGGAAAAGACAAACAGAAATCAGAGGCAGCGGGAGTGGTGGTACTAGAGGACTTGGGAGTTGATTATCTTGAGCAACTTCTCGCCATGTCTCATCAAAATGCAAGCCCTAGCTACTTCAAATAA	657	0.481	MSFPFFEHPCPDWDLWQDPSDMLLESFSSNQVYEDPIYDFLSFDMVDRTSMDPQAPSQGKQPDGSSKAKEVKSSKEKTYIGVRKRPWGKFAAEIRDTTRNGTRVWLGTFESAEEAALAYDQAAFSMRGSTAVLNFPVGRVKESLQDIKYGCRKGCSPALALKEKHYLQRKLMSSKAKKGKDKQKSEAAGVVVLEDLGVDYLEQLLAMSHQNASPSYFK	218

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere01g3125	218	SMART	rav1_2	78	142	IPR001471	GO:0003700\|GO:0006355
	Dere01g3125	218	FunFam	Ethylene-responsive transcription factor 2	77	137	-	-
	Dere01g3125	218	PRINTS	Ethylene responsive element binding protein signature	102	118	IPR001471	GO:0003700\|GO:0006355
	Dere01g3125	218	PRINTS	Ethylene responsive element binding protein signature	79	90	IPR001471	GO:0003700\|GO:0006355
	Dere01g3125	218	Gene3D	AP2/ERF domain	77	137	IPR036955	GO:0003700\|GO:0006355
	Dere01g3125	218	PANTHER	DNA-BINDING DOMAIN	60	207	IPR044808	GO:0003700\|GO:0009873
	Dere01g3125	218	MobiDBLite	consensus disorder prediction	51	76	-	-
	Dere01g3125	218	SUPERFAMILY	DNA-binding domain	78	137	IPR016177	GO:0003677
	Dere01g3125	218	Pfam	AP2 domain	79	128	IPR001471	GO:0003700\|GO:0006355
	Dere01g3125	218	ProSiteProfiles	AP2/ERF domain profile.	78	136	IPR001471	GO:0003700\|GO:0006355
	Dere01g3125	218	CDD	AP2	79	137	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere01g3125	Dere-ChrDere01	45788857	45789513	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere01g3125	69	213	AP2-EREBP Transcription Factor Family	AT3G23240	61.905	4.64e-58	181

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Dere01g3125		AP2	1.4e-14	CL0081