Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3123 ATGAGGAGAGTAATAACATATGATGACATACAAGACATCAACACCATGTCGTCCCCTTCGTCTCAGCACCAATGCCCAGATTGGGAGTTCTGGCAGGAGCCCTCTGATACTTTCTTGGAATCTCTATCAAGCAACCAAGTTCAACTACACCCGTTCCATGATTATCTTTCCTTCGATATGGTTGACAGGGAGGCAAAGCAATCGCCGGTGGATTCTGAATCTGAAGCCAGAGAAGCCAAGAGTAGTAAGGCGAAGACATACATAGGGGTGAGGAAGAGGCCATGGGGAAAATTTGCAGCGGAGATCAGAGACACAACCAGGAATGGGACTCGAGTTTGGCTGGGAACCTTTGGGAGTGCAGAGGAAGCTGCTTTAGCCTATGACCAAGCTGCATTCAGCATGAGAGGCTCCACTGCTGTTCTCAATTTTCCGGTGGACAGGGTGAAGCAGTCTCTGCAGGACATCGAGTATGGTTGCCGCAAAGGGTGTTCTCCTGCTTTAGCACTCAAAGAGAGGCACTACATCCAGAGAAAATTATTGTCATCAAAGGCTAAGAAAGAAAAAAGCAGACAGAAATCAGAGGTGGTGGTGCTAGAGGACTTGGGAGTTGAATATCTTGAGCAGCTTCTCACCATGTCTCACCATACTGAAAGCCCTACCTACTTCAGATGA 672 0.4777 MRRVITYDDIQDINTMSSPSSQHQCPDWEFWQEPSDTFLESLSSNQVQLHPFHDYLSFDMVDREAKQSPVDSESEAREAKSSKAKTYIGVRKRPWGKFAAEIRDTTRNGTRVWLGTFGSAEEAALAYDQAAFSMRGSTAVLNFPVDRVKQSLQDIEYGCRKGCSPALALKERHYIQRKLLSSKAKKEKSRQKSEVVVLEDLGVEYLEQLLTMSHHTESPTYFR 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3123 223 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Dere01g3123 223 PRINTS Ethylene responsive element binding protein signature 110 126 IPR001471 GO:0003700|GO:0006355
Dere01g3123 223 SMART rav1_2 86 150 IPR001471 GO:0003700|GO:0006355
Dere01g3123 223 CDD AP2 87 146 IPR001471 GO:0003700|GO:0006355
Dere01g3123 223 Gene3D AP2/ERF domain 85 146 IPR036955 GO:0003700|GO:0006355
Dere01g3123 223 Pfam AP2 domain 87 136 IPR001471 GO:0003700|GO:0006355
Dere01g3123 223 FunFam Ethylene-responsive transcription factor 2 85 146 - -
Dere01g3123 223 PANTHER DNA-BINDING DOMAIN 44 211 IPR044808 GO:0003700|GO:0009873
Dere01g3123 223 SUPERFAMILY DNA-binding domain 86 145 IPR016177 GO:0003677
Dere01g3123 223 ProSiteProfiles AP2/ERF domain profile. 86 144 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3123 Dere-ChrDere01 45761024 45761695 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3123 58 216 AP2-EREBP Transcription Factor Family AT3G23240 52.695 1.24e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere01g3123 AP2 1.4e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3123 01 45761024 45761695 Dere02g0798 02 7543712 7544371 CCT
Dere01g3123 01 45761024 45761695 Dere01g3123 01 45761024 45761695 ECH