Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3121 ATGCCTTCCCCTATGTTTCTTCACCCGGATTGGGAGTTCTGGCGGGATCCCTGTGATATTTTCATCGGATCTTTCCCAAGCAACCAAGTGCATGAAGACCCTTTTCATGATTATCTTTCCTTCGATGTGGTAGACAGCACTATCATAGATCCACAGCTACCAACCAACGGGAACGACAAAGAGGCGAAGCAACCGCCGTTGAGTTCGGAAGCCAAGGAAGGGAAGAAGAGTAGTAGAGAGAAAACATACATAGGGGTGAGGAAGAGGCCATGGGGAAAATTTGCAGCGGAGATCAGAGACACCACCAGGAATGGAACTCGGGTTTGGCTGGGAACGTTTGAGACTGCAGAGGAAGCTGCTTTAGCTTATGACCAAGCTGCATTCAGCATGAGAGGCTCCACTGCTGTTCTCAATTTTCCCGTGGAAAGGGTGAAGCAGTCTCTGCAAGACATCAAGTATGGCTGCCGCAAAGGGTGCTCGCCTGCTTTAGCACTTAAAGAGAGGCACTACATCCAGAGAAAATTATCGTCATCAAAGGCTAAGAAGGAAAAAAACAAACAGAAAGTAGAGGCAGCGAGTGTGGTGGTACTAGAGGACTTGGGAGTTGAATATCTTGAGCAACTTCTCAGCATTTCCCATCAAACTGCAAGCCCTAGCTACTTCAAATAA 669 0.4768 MPSPMFLHPDWEFWRDPCDIFIGSFPSNQVHEDPFHDYLSFDVVDSTIIDPQLPTNGNDKEAKQPPLSSEAKEGKKSSREKTYIGVRKRPWGKFAAEIRDTTRNGTRVWLGTFETAEEAALAYDQAAFSMRGSTAVLNFPVERVKQSLQDIKYGCRKGCSPALALKERHYIQRKLSSSKAKKEKNKQKVEAASVVVLEDLGVEYLEQLLSISHQTASPSYFK 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3121 222 PANTHER DNA-BINDING DOMAIN 65 212 IPR044808 GO:0003700|GO:0009873
Dere01g3121 222 FunFam Ethylene-responsive transcription factor 2 81 142 - -
Dere01g3121 222 Pfam AP2 domain 83 132 IPR001471 GO:0003700|GO:0006355
Dere01g3121 222 SMART rav1_2 82 146 IPR001471 GO:0003700|GO:0006355
Dere01g3121 222 Gene3D AP2/ERF domain 81 142 IPR036955 GO:0003700|GO:0006355
Dere01g3121 222 SUPERFAMILY DNA-binding domain 82 142 IPR016177 GO:0003677
Dere01g3121 222 MobiDBLite consensus disorder prediction 50 82 - -
Dere01g3121 222 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Dere01g3121 222 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Dere01g3121 222 ProSiteProfiles AP2/ERF domain profile. 82 140 IPR001471 GO:0003700|GO:0006355
Dere01g3121 222 CDD AP2 83 141 IPR001471 GO:0003700|GO:0006355
Dere01g3121 222 MobiDBLite consensus disorder prediction 65 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3121 Dere-ChrDere01 45705975 45706643 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3121 34 217 AP2-EREBP Transcription Factor Family AT3G23240 50.811 2.26e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere01g3121 AP2 6.3e-15 CL0081