Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3119 ATGGATTTAGATTCTTGTTTCTTCCATTACTCCAATCTTGAGTGCTCCCCTGTAAATTCCTCTGTTTCTGGAGAATCATTCTCCAGCTGGGATGACTTGTTGCTCTTCAACCACACCCACTCCTCCCTTCCTTTCAACTTTGACAACTACTCTCAACATGATACGATGTTTTACGATGTCCTGACCAAGGAATCATCCTTGGAATCCAATTCATCATCCTCTCCGGGAGGACTATTTGAAGTGCAAGAAGTCTCCTCCGGTTTCGCTTACGCCCAAGATAAAGCGAAAGAAGCAAACACTCCGGCGCCGGCGGCGCCGTCGCAGGCAACACCGGCGGGAGAGAAGAGAACGTACAGAGGAGTGAGGAGGCGGCCGTGGGGGAAATACGCGGCGGAGATAAGGGACTCCACCAGAAATGGGGTTCGAGTGTGGATCGGAACATTTGACACTGCCGAGGCTGCTGCTTTGGCTTACGATCAAGCTGCTTTTTCGTCGCGTGGGTCGCAGGCAGTGCTGAATTTCCCAGAGCAAGTGGTGAGGGAGTCGCTCAGAGACATGCCAAACAGGTCTTGGGAAGATGATGGTTCGTCCCCAGTGTTGGGTCTCAAGAAGAAGCACACCTTGAGAAGAAAGTCCAAGCCTCGTTCCGACACCAAAACCAAAAGCGATTGTAGCGATCCCAACGTGTTGGTGTTGGAGGATTTGGGAGCCGAGTATCTGGAGCAGCTCTTGACCATCACTTCATCTGATCATTATTAG 759 0.5099 MDLDSCFFHYSNLECSPVNSSVSGESFSSWDDLLLFNHTHSSLPFNFDNYSQHDTMFYDVLTKESSLESNSSSSPGGLFEVQEVSSGFAYAQDKAKEANTPAPAAPSQATPAGEKRTYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFSSRGSQAVLNFPEQVVRESLRDMPNRSWEDDGSSPVLGLKKKHTLRRKSKPRSDTKTKSDCSDPNVLVLEDLGAEYLEQLLTITSSDHY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3119 252 SMART rav1_2 117 181 IPR001471 GO:0003700|GO:0006355
Dere01g3119 252 Gene3D AP2/ERF domain 116 177 IPR036955 GO:0003700|GO:0006355
Dere01g3119 252 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
Dere01g3119 252 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Dere01g3119 252 CDD AP2 118 177 IPR001471 GO:0003700|GO:0006355
Dere01g3119 252 MobiDBLite consensus disorder prediction 185 225 - -
Dere01g3119 252 FunFam Ethylene-responsive transcription factor 2 116 176 - -
Dere01g3119 252 PANTHER DNA-BINDING DOMAIN 74 244 IPR044808 GO:0003700|GO:0009873
Dere01g3119 252 ProSiteProfiles AP2/ERF domain profile. 117 175 IPR001471 GO:0003700|GO:0006355
Dere01g3119 252 SUPERFAMILY DNA-binding domain 117 176 IPR016177 GO:0003677
Dere01g3119 252 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
Dere01g3119 252 MobiDBLite consensus disorder prediction 93 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3119 Dere-ChrDere01 45675610 45676368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3119 114 245 AP2-EREBP Transcription Factor Family AT2G31230 52.469 2.23e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere01g3119 AP2 3e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3119 01 45675610 45676368 Dere02g0799 02 7558765 7560342 CCT
Dere01g3119 01 45675610 45676368 Dere01g3119 01 45675610 45676368 ECH