LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere01g3113	ATGGTCCAGCTGCTAGTTTGTTTTCGAAATCAGGAGGAGACACAGAGAGAGAGACAGAAAGAGGAGAAAATGGGGAGAGCTCCTTGCTGCGAGAAAGTGGGATTGAATAAAGGTCCATGGGCTCCAGAAGAAGATCAAATACTCATCAATTATGTCAATAAATATGGCCACAGCAACTGGCGTGCCCTTCCCAAGCAAGCTGGTAATATCCTTGTTTCTAATTTTGCTTATGCAGGATTATCTCTGCTTCATTTCTCCATTGCACGTCCCTTACTTTTGATTTTTCCTTTTCCCCTTCTTTGTACTCTAGGGCTTCTAAGGTGTGGAAAAAGTTGCAGACTTAGATGGATAAATTACTTGAAGCCAGACATCAAACGAGGGAACTTCACTCCAGAAGAACAGAATACCATAATCAAGCTGCATGATATGTTGGGAAACAGATGGTCAGCAATTGCAGCGAGGCTACCAGGTCGCACAGACAATGAAATAAAGAACGTGTGGCACACGCACTTAAAGAAGAGGCTCCCACAATACCAACAAAACCTCCTTCAAGCTAAACGAAAATCCAAACAAAAGGAGCAACAACCCGTCACGGAAAACCGGCCACTCTCTCCTTCACAGTCTTCAAGTGATATGTCCACTCTCACCACGACTGATAACAACGAACATAACTGTGCAACTACTACTGCTACTGTTAATCTTGCTACTACTAACGACGACGTGTCCACAAATATTAATGTTGAGTCACCGGTGCCGGAGAATAATCTGGCATTGGACGATGAGTTCTGGTCGGAAGTACTGTCGGCTGATGATTCCGGGGAGACTACCGATGTTCCGGCCATAGGTGGTGTGGAGCCACAGTTTCAATTCCTATTCTCTCTGCCAGACGAGGCCCATGTAGAAGTAGATCATGCCAGTTCATCAAGCATGAGCGATGGCATGGATTTTTGGTACGATGTTTACGCTAGAGCTGAGGAATTCTCGGAGCTACCACAGATGTTACCTTGA	1008	0.4514	MVQLLVCFRNQEETQRERQKEEKMGRAPCCEKVGLNKGPWAPEEDQILINYVNKYGHSNWRALPKQAGNILVSNFAYAGLSLLHFSIARPLLLIFPFPLLCTLGLLRCGKSCRLRWINYLKPDIKRGNFTPEEQNTIIKLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLPQYQQNLLQAKRKSKQKEQQPVTENRPLSPSQSSSDMSTLTTTDNNEHNCATTTATVNLATTNDDVSTNINVESPVPENNLALDDEFWSEVLSADDSGETTDVPAIGGVEPQFQFLFSLPDEAHVEVDHASSSSMSDGMDFWYDVYARAEEFSELPQMLP	335

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere01g3113	335	CDD	SANT	39	120	IPR001005	-
	Dere01g3113	335	Pfam	Myb-like DNA-binding domain	126	171	IPR001005	-
	Dere01g3113	335	Pfam	Myb-like DNA-binding domain	37	120	IPR001005	-
	Dere01g3113	335	ProSiteProfiles	Myb-like domain profile.	32	120	IPR001005	-
	Dere01g3113	335	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	32	69	IPR017930	-
	Dere01g3113	335	MobiDBLite	consensus disorder prediction	196	224	-	-
	Dere01g3113	335	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	24	273	-	-
	Dere01g3113	335	Coils	Coil	175	195	-	-
	Dere01g3113	335	MobiDBLite	consensus disorder prediction	184	224	-	-
	Dere01g3113	335	SUPERFAMILY	Homeodomain-like	31	66	IPR009057	-
	Dere01g3113	335	Gene3D	-	37	125	-	-
	Dere01g3113	335	SMART	sant	36	122	IPR001005	-
	Dere01g3113	335	SMART	sant	125	173	IPR001005	-
	Dere01g3113	335	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	121	175	IPR017930	-
	Dere01g3113	335	CDD	SANT	128	171	IPR001005	-
	Dere01g3113	335	FunFam	Transcription factor MYB15	127	200	-	-
	Dere01g3113	335	SUPERFAMILY	Homeodomain-like	107	178	IPR009057	-
	Dere01g3113	335	ProSiteProfiles	Myb-like domain profile.	121	171	IPR001005	-
	Dere01g3113	335	Gene3D	-	128	201	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere01g3113	Dere-ChrDere01	45611425	45613147	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere01g3113	24	333	MYB Transcription Factor Family	AT2G31180	42.675	3.56e-80	243

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Dere01g3113		Myb_DNA-binding	1.2e-10	CL0123