Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3101 ATGTACCGCGACGTGTTTCGATTGGACGATCTGGAGAAGCTCATTGATGGTTCCAATATTCAGCCATATACGATTAATGGAGCGAAGGATTCTTCAGGACCCTTTTCACTTCTGTTCATTGCGGCTGCTGCTGCTCAACCTAAGAAGTCTTGGATCCCTGCCATTAAAGGAGATGGAAACTTCATCGACCCTGAATGGCTCGATGACCCGCCACCATGA 219 0.4795 MYRDVFRLDDLEKLIDGSNIQPYTINGAKDSSGPFSLLFIAAAAAQPKKSWIPAIKGDGNFIDPEWLDDPPP 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3101 72 Pfam PLATZ transcription factor 1 29 IPR006734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3101 Dere-ChrDere01 45499874 45500315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3101 38 72 Chloroplast and Mitochondria Gene Families AT1G15820 77.143 1.38e-13 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Dere01g3101 PLATZ 9.5e-07 No_clan