Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3098 ATGCATATTGCTTTAGGTCAAAGAGATACAACTTCGGTAAAATGTCTTGTCAACAGCATTTCTCGATTCATACATCTGGTTTCTTGCCAAACAGTGAAACCTATGCCCTTTCAGAAGAACTGTAATCATATGAATGGTGTGTTAAAGCGTTTGAAACCAGTGCTTGATGATGTTATTGACTGCAAAATCTACTTGGATGAAAATCTACGTAAAGAGTGTGAAGAATTGGATAGGGCAGTTAATGAAGCTCGAGAGTTCATGGAAAAATGGAGCCCAAAGCTAAGTAAGATTCTCAGTGTTCTGCGAAGTGGGTCATTGTTGATGAAAATACAGATCTGCTCGGTTGAGATTTGTCACATGATAATTAGATCCCTACATTCACCTCCACCTACTTCAGTTCTGGCTAGTCTTCAGAGCTATTTGCAGGAACTTAAATGTTTAAAGAAGGAACCAGCCACAGGCTATATAGAAGAGGCATTGAGAAATCAAAGAGAAAATATTGAACCTTGCAACGAAAATCTGAAGATTATTATTGAATTACTTGGACTGACATCAAACCTGGAACTCTTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGATTGAGTGCTGAGGTCAATAAAATGAAAGGGGAATTAGATGAAATTAATGAAATTGTGAACCTTGTCTGCAATTTACGTGATTATGTGATTAAAATTGAGTGCCATGAAGTCAGAAGTGGTGTCTCAATTCCTTCATACTTCATCTGTCCTTTATCGTTGGAACTCATGCTGGATCCTGTTATTGTAGCTTCAGGTCAAACATATGAGAGGCTGTCCATTCAAATGTGGCTCGATCATGGGTTAACTGTTTGTCCCAAGACTCATCAGAGACTTACTCATACAAACCTCATTCCTAATTATACTGTCAAGGCTATGATAGCAAATTGGTGTGAGGAAAATAATGTCAAACTTCCTGGTAACTCTGAGTCCAATAATTCTGTACATACGAAATCCCCTACAGATCATGTATTGCCTCAAGATTTAGCTTGTCCATGTAGTTTGGGGTCTGCACATAGTAGCAATTCCACATCAAGATCATCTCTTCAAACTGGAAATGCATCTGAGAAGCAAAAGGGTGATATCTCTTCCGGACTAAGTGGAGAATCCAATGGATGCCAGAGCATAGAGTCAGAAAAGCATGAGCAACAATCCCCTGCACCTTCCTATATTTATTGTAGAAGTGAATCATTCTCAAGCTCCATTTCTAGTACTGATTATGCACATCCAGTTTCAAAAGAAGCATCAGAGGTATTTAAGAAGAATGAAAATGTAAAGGAGCTGTCTGGAGAAATCACAAATGGATGTCCTCCTTCTTCCACGAATAAGGATTCAGGGTCTTCCCCTTTTCAAAGCTCAAGATCAAAATTAGGAGGTATAGAGAATAGAAATAATAATAATAATAACATTCAGTCAAAAGAGCAATCCTTTCCTGTTTGCAATCCTGGATCTGATGAGTTGACCACAACATCTTATGTCAACAAGTTGATTGAAGACCTTCACAGTCAATCCAATGAAGTGCAAACTAAGGCTGCAGAAGAATTGAGGCTTCTTTCAAAGCACAATGTGGAAAATCGAATCATTATAGGGCAATGTGGGGCTTTCATTCCTTTACTTTCACTACTATATTCAGAAGTGAAGATAACACAAGAACATGCTGTGACAGCTTTGCTGAATTTGTCAATTAGTGAAGATAACAAGGCCTTGATTGTGGAAGCTGGAGCAATAGAACCCCTTATCCATGCTCTGAGAACAGGAAATGATGGAGCCAAGGAGAATTCTGCAGCAGCTTTATTTAGCCTTTCTGTTGTAGAAAATTATAAGGCAACGATTGGCCAATCTGGTGCAGTTAAAGCTTTGGTTGATCTTCTAGGCTCAGGAACTCTTAGAGGAAAGAAGGACGCTGCAACTGCTTTATATAACCTATCAATATGTCATGAGAATAAAGCCCGTATAGTTCAAGCTGGAGCTGTAAAGTTTCTGGTTCAGTTAATGGACCCTGCTACTGGAATGGTTGACAAGGCTGTTGCTCTTCTGGCAAACCTGTCAACAATTGCAGAGGGCAGGTTAGCAATTGTAAGGGAAGGGGGCATCCCTTTACTAGTTGAGTTTGTTGATTCAGGTTCCCAAAGGGGAAAGGAAAATGCTGCATCCATTCTCTTGCAACTATGCCTCCACAGTACCAAGTTTTGTACTCTGGTTCTGCAAGAAGGAGCGGTACCTCCCTTAGTTGCATTATCTCAATCTGGTACACCAAGAGCAAAGGAAAAGGCACAACAGCTTCTAAGCCATTTTCGTTATCAGCGGGAAGGAGCTACTGGGAAGGGAAAAGCTTGA 2373 0.3987 MHIALGQRDTTSVKCLVNSISRFIHLVSCQTVKPMPFQKNCNHMNGVLKRLKPVLDDVIDCKIYLDENLRKECEELDRAVNEAREFMEKWSPKLSKILSVLRSGSLLMKIQICSVEICHMIIRSLHSPPPTSVLASLQSYLQELKCLKKEPATGYIEEALRNQRENIEPCNENLKIIIELLGLTSNLELLKESIAVEKERLSAEVNKMKGELDEINEIVNLVCNLRDYVIKIECHEVRSGVSIPSYFICPLSLELMLDPVIVASGQTYERLSIQMWLDHGLTVCPKTHQRLTHTNLIPNYTVKAMIANWCEENNVKLPGNSESNNSVHTKSPTDHVLPQDLACPCSLGSAHSSNSTSRSSLQTGNASEKQKGDISSGLSGESNGCQSIESEKHEQQSPAPSYIYCRSESFSSSISSTDYAHPVSKEASEVFKKNENVKELSGEITNGCPPSSTNKDSGSSPFQSSRSKLGGIENRNNNNNNIQSKEQSFPVCNPGSDELTTTSYVNKLIEDLHSQSNEVQTKAAEELRLLSKHNVENRIIIGQCGAFIPLLSLLYSEVKITQEHAVTALLNLSISEDNKALIVEAGAIEPLIHALRTGNDGAKENSAAALFSLSVVENYKATIGQSGAVKALVDLLGSGTLRGKKDAATALYNLSICHENKARIVQAGAVKFLVQLMDPATGMVDKAVALLANLSTIAEGRLAIVREGGIPLLVEFVDSGSQRGKENAASILLQLCLHSTKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRYQREGATGKGKA 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3098 790 Coils Coil 69 89 - -
Dere01g3098 790 MobiDBLite consensus disorder prediction 445 492 - -
Dere01g3098 790 FunFam RING-type E3 ubiquitin transferase 489 783 - -
Dere01g3098 790 PANTHER U BOX DOMAIN-CONTAINING 38 777 - -
Dere01g3098 790 Pfam Armadillo/beta-catenin-like repeat 575 614 IPR000225 GO:0005515
Dere01g3098 790 Pfam Armadillo/beta-catenin-like repeat 699 736 IPR000225 GO:0005515
Dere01g3098 790 Pfam Armadillo/beta-catenin-like repeat 620 655 IPR000225 GO:0005515
Dere01g3098 790 Pfam Armadillo/beta-catenin-like repeat 534 573 IPR000225 GO:0005515
Dere01g3098 790 CDD RING-Ubox_PUB 244 296 IPR045210 -
Dere01g3098 790 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 627 669 IPR000225 GO:0005515
Dere01g3098 790 ProSiteProfiles U-box domain profile. 242 316 IPR003613 GO:0004842|GO:0016567
Dere01g3098 790 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 545 587 IPR000225 GO:0005515
Dere01g3098 790 Pfam U-box domain 243 314 IPR003613 GO:0004842|GO:0016567
Dere01g3098 790 Coils Coil 191 218 - -
Dere01g3098 790 MobiDBLite consensus disorder prediction 350 399 - -
Dere01g3098 790 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 668 709 IPR000225 GO:0005515
Dere01g3098 790 Gene3D - 472 580 IPR011989 -
Dere01g3098 790 Gene3D - 581 786 IPR011989 -
Dere01g3098 790 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 317 IPR013083 -
Dere01g3098 790 MobiDBLite consensus disorder prediction 441 492 - -
Dere01g3098 790 SMART arm_5 697 737 IPR000225 GO:0005515
Dere01g3098 790 SMART arm_5 534 574 IPR000225 GO:0005515
Dere01g3098 790 SMART arm_5 739 779 IPR000225 GO:0005515
Dere01g3098 790 SMART arm_5 575 615 IPR000225 GO:0005515
Dere01g3098 790 SMART arm_5 616 656 IPR000225 GO:0005515
Dere01g3098 790 SMART arm_5 657 696 IPR000225 GO:0005515
Dere01g3098 790 SUPERFAMILY ARM repeat 497 777 IPR016024 -
Dere01g3098 790 SUPERFAMILY RING/U-box 241 318 - -
Dere01g3098 790 SMART Ubox_2 246 309 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3098 Dere-ChrDere01 45480112 45484238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3098 9 790 U-box Gene Family AT3G54790 54.188 0.0 723