Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3093 ATGAAATCAAAAATTGGAAGAAATTATGACAAAGTTGAGAAGATGGAAAACCTTTCAGTTCCCCCTGGTTTTAGATCCCTTACCTCTTTCATACTAAAAAGGGTTGAAAACGTTGAAAAGGCTGATATATCTGAACATGAGCCAATCTGCACGGAAACTATATCTGAGCTGAATGACACTGCTGCATATAAGGAAATTCTTAAGTATTGTCCATGGATACTTTTTGATCAAAGAAATCATGACCCTGAGAATTCTGATACAGAGCATCATCTGCGGGATTTTCCTTCAAATGCTTGTCTTCCAAAAGGGGTTACTCTTGGTTGCCCAGACTGCAGTGATTGTCTGAAGGTAACTGCAAGGTGGCGCCCTGAGGATGCAAGAACAGATGTCCTTGATGAAGCTCCTATTTTCCATCCAACAGATGAGGATTTTAAAGACACACTTAAATATATTGCAAGCATACGTTCCAAAGCAGAGCCTTATGGAATTTGTCGTATCATTCCTCCTCCTACTTGGCAACCACCGTGTCTTCTTGAGGAAAAGAACATATGGGAAAGCTCCAAATTTGTGACTCAGACTCAGCGGATTGATGGACTCCTAGTTCAATGCCAGCAAGAAATTATGGCCAACTCCTCTGGAAATACAACTACCAAGACCAGAAGAGGTCTAGATTTAAGCTCTCAACTTGGTAATGGAGACCTCCATGATGTTAAAGACTTTGAGTCTAAACCTGGTCCTACATTCAGTCTCAGTACATTCAAGAAATTTGCTGATGATTTTAAGGCCATGTACTTCAACTATGACAATTATGTCATGGGTTCTGATAATAAGTGGGAGCCATCTGTGGAAAATCTCGAGGGTGAACATGGACGGATTATTCAGAATCCAACTGAAGAAATTCAGGTGTTTTATGGTAAGGATTTGGGGGCTGGAATTATGAGCAGTGGATTTCCAACGGTATCTGATCCGCTAGAGTCACTCAAATATTCTGAATGCATGAAATCTGGATGGAACTTAAATAATATGCATATGCAGTCTGGTTCTCTTCTTTCTTTTGAAAGCTCTGAGGTTTCTCGCAAATTTGCCCCTCAGATTCATGTTGGAATGTGCTTTTCTTCATTCAACTGGAAAGTAGAAGAGCACCAGTTCTACTCGTTGTGTTACATGCATTTGGGTGAACCTAGAGTGTGGTATGCCATCCCAGGAAGATTTGCTGCCAACTTTGAAACAGTAAAGAAGAAGTATCTCCCAGTTTTGTTTGCAGAACAGCCTGACTTGTATGAGAATTTGGGGATGCAGTTATCATCCACTATAATGAAGTCAGAGGGCATACCAGTATATCGCTGTGTTCAGTATCCTCAGGAGTTTGTTCTTGTCTTCTCAGGAGCATATCATTCAGGATTTGATTGTGGTTTCAACTGTTCAGAATCAGTCAGTTTTGCTCCTCTTGAGTGGCTGCTTCATGGACAGAATGTTGTAGAGTCGTACTGTGAACACAGGAGAAAGACGTCAATCTCATATGATAAGCTGTTGCTTGGGGCAGCAAGGAAAGCTGTTAGGGCACAATTTGAAATTGAACTGTGCAAGATGAGTAGCCCAGATAATTTAACATGGAAAGATGCCAGTGGCAGGAACGGAATATTAACAAAAGCATTGGATTCACGCATAAGGTGCGAAAGTTTAAAGAGGGAATTTCTCTGCACGTCTTTGAAATCACAGAGAATGGACAAAGATTTTGATGACACTTGTAAAAGGGAATGCAGTATATGTCTGCGCGATTTACACTTATCTGCCATAGGTTGTTCATGTTCAACAAACAAATTTGCATGTCTTAATCATGCAAAGCAACTCTGTTCTTGCACTTGGACTGACAAATTTATCCTCTGCCAATATGAAATCACCGAGTTGAATGCCCTTTGTCTTGCTTTGGAGGGAAAATTAAGTGCTATCTACAGATGGGCTAAAGAGGATCTTGGATTAACTCTGCACTCTGTGGCCTCCAATAGATTGAAACAAAGCCCAGGACATGTGAGTGGTTCATCGTCAACTCCAGTAGCAAGAGCAGCAATTTTGAATGCACTGAAACGGAAAAGAGATGCTGTAGGGTCCAAAGAAACGGGTGGTGATCCTATATCTTCAGGAATTGAGGCAAAATCGAAGACACCATTAGATAAATCAATAAGTGAGTTGAAAACGAAACAGAAAACGGTTGGGCACCAATCTACCACAACAAGCATTAACAGAGGGCTCAAATCTGCTTCTGGCATTAAACCTAATATGAAGGCACGTGTAATTCAGTCAATAATTCCGAATTCGGTTGAGGGTGACACCAAAGCGTCAAGGGTCTTTTTAGGTGCAAATACAACCTCAAAATATATGGCTTTTCTCTCAGAAAACAAGTCATTTGATGTTTCTTCAGATAGTTCATCTTCATCTTCACAATCCGATGATGACACTTGA 2460 0.4069 MKSKIGRNYDKVEKMENLSVPPGFRSLTSFILKRVENVEKADISEHEPICTETISELNDTAAYKEILKYCPWILFDQRNHDPENSDTEHHLRDFPSNACLPKGVTLGCPDCSDCLKVTARWRPEDARTDVLDEAPIFHPTDEDFKDTLKYIASIRSKAEPYGICRIIPPPTWQPPCLLEEKNIWESSKFVTQTQRIDGLLVQCQQEIMANSSGNTTTKTRRGLDLSSQLGNGDLHDVKDFESKPGPTFSLSTFKKFADDFKAMYFNYDNYVMGSDNKWEPSVENLEGEHGRIIQNPTEEIQVFYGKDLGAGIMSSGFPTVSDPLESLKYSECMKSGWNLNNMHMQSGSLLSFESSEVSRKFAPQIHVGMCFSSFNWKVEEHQFYSLCYMHLGEPRVWYAIPGRFAANFETVKKKYLPVLFAEQPDLYENLGMQLSSTIMKSEGIPVYRCVQYPQEFVLVFSGAYHSGFDCGFNCSESVSFAPLEWLLHGQNVVESYCEHRRKTSISYDKLLLGAARKAVRAQFEIELCKMSSPDNLTWKDASGRNGILTKALDSRIRCESLKREFLCTSLKSQRMDKDFDDTCKRECSICLRDLHLSAIGCSCSTNKFACLNHAKQLCSCTWTDKFILCQYEITELNALCLALEGKLSAIYRWAKEDLGLTLHSVASNRLKQSPGHVSGSSSTPVARAAILNALKRKRDAVGSKETGGDPISSGIEAKSKTPLDKSISELKTKQKTVGHQSTTTSINRGLKSASGIKPNMKARVIQSIIPNSVEGDTKASRVFLGANTTSKYMAFLSENKSFDVSSDSSSSSSQSDDDT 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3093 819 Pfam JmjC domain, hydroxylase 365 480 IPR003347 -
Dere01g3093 819 ProSiteProfiles JmjN domain profile. 134 175 IPR003349 -
Dere01g3093 819 SMART cupin_9 328 497 IPR003347 -
Dere01g3093 819 MobiDBLite consensus disorder prediction 733 752 - -
Dere01g3093 819 ProSiteProfiles JmjC domain profile. 331 497 IPR003347 -
Dere01g3093 819 Pfam C5HC2 zinc finger 587 639 IPR004198 -
Dere01g3093 819 SUPERFAMILY Clavaminate synthase-like 328 519 - -
Dere01g3093 819 PANTHER LYSINE-SPECIFIC DEMETHYLASE 129 716 - -
Dere01g3093 819 SMART JmjN_1 133 174 IPR003349 -
Dere01g3093 819 Gene3D Cupin 119 481 - -
Dere01g3093 819 Pfam jmjN domain 135 168 IPR003349 -
Dere01g3093 819 MobiDBLite consensus disorder prediction 700 753 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3093 Dere-ChrDere01 45443115 45448180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3093 19 667 JUMONJI Transcription Factor Family AT1G08620 46.188 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dere01g3093 JmjC 1.2e-31 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3093 01 45443115 45448180 Dere01g3093 01 45443115 45448180 ECH