Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3092 ATGGGTCTTAGGGACATTGGTGCTTCACTGCCTCCTGGGTTTCGGTTTTATCCGAGTGATGAGGAATTGGTTTGTCATTACCTTTACAAGAAGATCTCAAATGAGGAAGTTCTCAAGGGTACTTTGGTCGAAATTGACTTGCATACATGCGAGCCATGGCAGCTTCCAGAGGTGGCTAAGCTCAACGCAAATGAATGGTATTTCTTCAGTTTCCGTGACCGCAAATACGCTACGGGTTTCCGAACCAATAGGGCGACGGCATCTGGATATTGGAAAGCAACGGGGAAGGATCGTACGGTGCTGGATCCAATCACACGTGAGGTTGTAGGAATGAGGAAGACGTTGGTGTTCTACAGGAACAGAGCTCCCAATGGTATCAAAACTGGCTGGATCATGCATGAGTTCCGCTTGGAGACCCCACACATGCCCCCTAAGGAAGACTGGGTTTTGTGTAGAGTTTTTCACAAAAGCAAATCAGAAGACAACAACAATATTAATGCCAGGCTCATGTTCGACGCCATTCCATCTCCTTCCCTAACTCTGGCTTCATCATCTCCAACCAACCAAGCCATCCCTGTTGGGTATAACCAACTTTCTTCCTCCTCAATCCCAACCCTTAATCAAACCAACCATCATTCTCTCATGAATCTCCTTCACTTTTCTCTGGAAACAAACACCAGCACTATTACTGATCAGATTAGTCCAAAAGGTGACGATGGGTACGGGTTCTTATGGGACATGGATCTCGAAGAAAACAGCAGCTTTCAGAATGGCGTGGACGCAATGAGATCGTTCGAGGTTGATAATAATAGCATGGTCTTGTTATAA 828 0.4589 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKISNEEVLKGTLVEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATASGYWKATGKDRTVLDPITREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKSEDNNNINARLMFDAIPSPSLTLASSSPTNQAIPVGYNQLSSSSIPTLNQTNHHSLMNLLHFSLETNTSTITDQISPKGDDGYGFLWDMDLEENSSFQNGVDAMRSFEVDNNSMVLL 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3092 275 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Dere01g3092 275 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Dere01g3092 275 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 216 - -
Dere01g3092 275 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Dere01g3092 275 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3092 Dere-ChrDere01 45432407 45436038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3092 6 179 NAC Transcription Factor Family AT1G56010 55.495 1.24e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere01g3092 NAM 1.5e-37 No_clan