Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3084 ATGATTCGACCACATTCGCATGACTCTTGGGACTACCCAAATAATGTTGGGTTGTCGTCATCATCAGCTCCAACCCCATCAATCCTGTTTTCAAAGCCACCAATTGACACCCACACCACCGTAAACTTGGCACAAAACGAGCTTTCAGATTGGGTGGAGCATATTACCAAACACCTTGTGGACGACATACCAGAAGCCACATCCGATAACTTGCTTCCTTATAGCCACCAAACAAGGTCTTCCCATGACAACCTCGTACCTACAATTTCACCCGTTGTCAACCCAAGAAAGGGTCCCTTCAACAATGACCTTCAAATTCAAACAAACCCTTCAGATGATAACCAAAACAATGACGGGTTAAACCTTTTGACACTTCTAATGGAGTGTGCAGTGGCAATCTCAGTGGACAACCTCGGTGACGCACACGGGATGTTGCTTGAGCTAACCCAAGTGGCCTCACCTTACAAACCATCCTGTGCTGAGCGTATCGTTGCCTATTTCGCTAAAGCCATGGCTAGCAGAGTCATGAACTCATGGCTTGGGATATTTTCCCCTTTGATTGACCACAGAAGCATTCACTCTTCATTCCAAGTGTTCAACAACATTTCCCCTTTCATCAAATTTGCTCATTTCACTTCCAATCAAGCCATACTCGAAGCAGTGCATCGTTGTGATAGTATTCATATCATAGACCTAGACATCATGCAGGGGCTTCAATGGCCAGCCTTCTTCCACATCCTCGCCACCCGAATGGAGGGTCCACCGCGTGTTCGAATGACAGGCATGGGAGCATCAATGGATCTCCTCGTCGAGACAGGGAAACAGCTCACAAATTTCGCCAAAAGGCTTGGAATGTCGTTTCATTTCCAACCAATTGCGAGGAAATTCGGAGAACTTGAGGATGTCTCACTGGTGCAAGTAAGGCCTGGTGAGACATTAGCCGTCCACTGGCTACAACACTCGCTGTACGACGCAACTGGACCAGATTGGAAAACTCTGAGACTCCTTGAAGAATTGGAGCCTAGGATTATAACTTTGGTGGAACAAGATGTTTCAAATGGTGGGTCATTTTTGGATCGTTTTGTTGGGTCTCTGCACTATTACTCTACTCTGTTTGATTCTCTTGGAGCTTACATGACCTGTGAGGACCCTAATAGGCACAGGGTTGAACATGGGCTTTTGTCTAGGGAGATCAATAATATCTTAGCCATAGGAGGGCCCGCTAGAAGTGGGGAAGACAAGTATAGACAGTGGAGGAGTGAGCTTGTGAGACATTGTTTTGTGCAGCTTCCAATGAGTCCTAATTCCATGGCTCAAGCTCAATTGATATTGAACATGTTCTCTCCTGCTCATGGCCATGGGTATACCCTTGCCCAAGTTGATGGCACACTAAAGCTTGGATGGAAGGACACTAGCTTGTATACTGCTTCTGCATGGACATGTTGCTCCAGAACCTGA 1458 0.4643 MIRPHSHDSWDYPNNVGLSSSSAPTPSILFSKPPIDTHTTVNLAQNELSDWVEHITKHLVDDIPEATSDNLLPYSHQTRSSHDNLVPTISPVVNPRKGPFNNDLQIQTNPSDDNQNNDGLNLLTLLMECAVAISVDNLGDAHGMLLELTQVASPYKPSCAERIVAYFAKAMASRVMNSWLGIFSPLIDHRSIHSSFQVFNNISPFIKFAHFTSNQAILEAVHRCDSIHIIDLDIMQGLQWPAFFHILATRMEGPPRVRMTGMGASMDLLVETGKQLTNFAKRLGMSFHFQPIARKFGELEDVSLVQVRPGETLAVHWLQHSLYDATGPDWKTLRLLEELEPRIITLVEQDVSNGGSFLDRFVGSLHYYSTLFDSLGAYMTCEDPNRHRVEHGLLSREINNILAIGGPARSGEDKYRQWRSELVRHCFVQLPMSPNSMAQAQLILNMFSPAHGHGYTLAQVDGTLKLGWKDTSLYTASAWTCCSRT 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3084 485 ProSiteProfiles GRAS family profile. 113 480 IPR005202 -
Dere01g3084 485 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 100 476 IPR005202 -
Dere01g3084 485 Pfam GRAS domain family 123 480 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3084 Dere-ChrDere01 45362937 45364394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3084 114 480 GRAS Transcription Factor Family AT3G54220 54.813 1.21e-134 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dere01g3084 GRAS 2.7e-100 CL0063