Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3083 ATGGATCATCTGGTTGGTGGGAAGTTTAAACTGGGTAGGAAGATCGGGAGTGGGTCTTTTGGGGAGCTTTATTTAGGCGTAAATGTACAAAATGGAGAGGAGGTGGCCGTTAAGCTGGAACCTGCAAAGACCAAGCATCCTCAGCTTCTGTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACTGGGATTCCCCACATCAAGTGGTTTGGAGTTGCGGGAGACTACAATGTCATGGTTATTGACCTTCTTGGACCAAGTCTGGAAGATTTGCTCAACTATTGCAGCCGGAAATTCACATTGAAGACTGTGTTGATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCATTCAAGAGGTTTTCTTCACCGTGACATAAAGCCTGACAATTTTCTTATGGGGCTAGGGCGTAAATCAAACCAGGCATACATTATTGACTATGGCCTTGCAAAGAAGTATAGGGATCTTCAGACTCATAAGCACATACCATACAGGGAAAACAAGAACCTCACAGGCACAGCTCGCTATGCTAGTGTCAATACTCATCTTGGAATTGAGCAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTTCTCATGTACTTCTTGAGAGGAAGTCTTCCTTGGCAGGGACTGAAAGCTGGCACCAAAAAACAAAAATATGACAAGATCAGCGAGAAGAAGATGTCAACTCCCATAGAGGTGCTCTGTAAATCATATCCATCTGAGTTTGTATCATACTTCCACTACTGCCGATCCTTACGTTTTGAGGACAAGCCAGATTATTCATATTTAAAAAGGCTTTTTCGAGACTTGTTTATACGAGAAGGCTATCAGTTTGACTATGTTTTTGACTGGACTGTATTGAAGTATCCACAGATTGGTTCTAGCTCTAGAGGACGGCATGGCAGTGGCAAAGCAGCTATAACTGCAGGAACGTCTGTGCAAAAGCCAGAAAGAATGTCAGCTGGGAAAGATACTCGAGAGAAATACTCCAGTGCTGTTGAAGCATTCTCCAGGAGAAACCCCACATGTTCTAGTCCTCGAGGTGATCAAACTAAACATAGAATATTTGAGGATGTACCACTACATAAAGATATGCACCATGAACAAGAGAAGGGACGCAATTCTACTCAATATGGCAGCAGTTCAAGAAAAGCCATCATCTCATCAAACAAGCCAAGTTCCTCAGGTGATCACAGTGATAATCGTACTGGTCGGCTGACTCCAAGTAGTAGCCGCCCTTCTACCACACGCACTCTGTTTGAGGGCAAACAAACAAGCTTTACGCGCAATGCATCTACTAAAGGCAATCGTGATGACCCTCTTAGGAGCTTTGAGCTTCTCTCTATCAGGAAGTAA 1374 0.4309 MDHLVGGKFKLGRKIGSGSFGELYLGVNVQNGEEVAVKLEPAKTKHPQLLYESKLYMLLQGGTGIPHIKWFGVAGDYNVMVIDLLGPSLEDLLNYCSRKFTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKSNQAYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTVLKYPQIGSSSRGRHGSGKAAITAGTSVQKPERMSAGKDTREKYSSAVEAFSRRNPTCSSPRGDQTKHRIFEDVPLHKDMHHEQEKGRNSTQYGSSSRKAIISSNKPSSSGDHSDNRTGRLTPSSSRPSTTRTLFEGKQTSFTRNASTKGNRDDPLRSFELLSIRK 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3083 457 FunFam Casein kinase 1-like protein 1 330 - -
Dere01g3083 457 CDD STKc_CK1_delta_epsilon 8 282 - -
Dere01g3083 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Dere01g3083 457 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3083 457 MobiDBLite consensus disorder prediction 300 457 - -
Dere01g3083 457 Gene3D Transferase(Phosphotransferase) domain 1 1 345 - -
Dere01g3083 457 MobiDBLite consensus disorder prediction 325 339 - -
Dere01g3083 457 MobiDBLite consensus disorder prediction 341 355 - -
Dere01g3083 457 MobiDBLite consensus disorder prediction 441 457 - -
Dere01g3083 457 MobiDBLite consensus disorder prediction 356 379 - -
Dere01g3083 457 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Dere01g3083 457 FunFam Putative Casein kinase I 1 85 - -
Dere01g3083 457 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3083 457 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Dere01g3083 457 SMART serkin_6 9 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3083 457 MobiDBLite consensus disorder prediction 380 440 - -
Dere01g3083 457 PANTHER CASEIN KINASE-RELATED 13 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3083 Dere-ChrDere01 45354066 45360229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3083 8 213 MAP Kinase Kinase Kinase AT3G06030 27.523 4.38e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Dere01g3083 Pkinase 1.4e-25 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3083 01 45354066 45360229 Dere01g3083 01 45354066 45360229 ECH