Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3078 ATGCCAGCTTTGGTAGTCACAACCACATTGTACCAACACCCCGGTACACTTATACTGCTTTCACCCGCAAGCCCAGTTCACCCTATCGCCCAGCTCGTTATTCATCTCTCCTCTTTTGAGCCTTCATATTCAAAAGATGATAAGTATGGTTCATTTGTGTGGGATTCTCAACCATTCAAGAGGTATGTGGAGATTGGAAGCGTTGCCCTGGTGAACTATTGGAAGGACTACAGAAAACTTGTCGTGATCATTGATGTAGTCGATCCAAACAAGGCTCTGGTTGACTTCCCTGATATGGTGAGGACCCAAATGAATTTAAAGAGGCTTTCACTGACAGATTTCAAGGTTGACATCAATAGGGTTCCTAAGAAGAAGACATTGATTCAGGCAATTGAGGCTGCCGATGTGAAGAACAAATGGGAGAACTGTTCCTGGGGCAGGAAGCTGATTCTGCATAAAAGAAGAACTTGGCTCAATGATTTTGATAGGTTTAAGCTTACGTTGACAAAGATCATGTTAGAGAGTGCAGTCCATTCAATGTTTTGGATGGGTATTCCTCTCAGGGATTTTATCGCCTGTGCATTTGAAAGCAGGTTATGGAAGTGA 606 0.4323 MPALVVTTTLYQHPGTLILLSPASPVHPIAQLVIHLSSFEPSYSKDDKYGSFVWDSQPFKRYVEIGSVALVNYWKDYRKLVVIIDVVDPNKALVDFPDMVRTQMNLKRLSLTDFKVDINRVPKKKTLIQAIEAADVKNKWENCSWGRKLILHKRRTWLNDFDRFKLTLTKIMLESAVHSMFWMGIPLRDFIACAFESRLWK 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3078 201 CDD KOW_RPL14 63 135 IPR041985 -
Dere01g3078 201 Gene3D - 57 140 IPR014722 -
Dere01g3078 201 Pfam Ribosomal protein L14 101 170 IPR002784 GO:0003735|GO:0005840|GO:0006412
Dere01g3078 201 SUPERFAMILY Translation proteins SH3-like domain 61 149 IPR008991 -
Dere01g3078 201 FunFam 60S ribosomal protein L14-1 57 140 - -
Dere01g3078 201 PANTHER 60S RIBOSOMAL PROTEIN L14 58 178 IPR039660 GO:0003723|GO:0003735
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3078 Dere-ChrDere01 45316546 45318688 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3078 59 171 Cytoplasmic Ribosomal Protein Gene Family AT2G20450 76.106 2.19e-58 178