Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3065 ATGAAGTGCCTATGTTCGGGAGAGCAGTTAAGAAGAGCAGAAGAAATGGTTCCTTCATCTGAATCTCTTGCAGCCAAGGATAATTCGGTGAGTGGGGATTCTTCCCCAGCTGGACTAGTTGACAAGAAGAAGCCGGATACTGGTAATATTGAAGAAGCTGAATCATCCCTTCGTGAGAGTGGTTTCTTGAATTATGAGGAAGCTAGAGCTCTGTTAGGAAGATATGAATTTCAGAAAGGCAATATTGAAGCAGCTTTACATGTTTTTGAGGGAATAGATATAGGTGCTGTGACTCCTAAAATCAAAATTTGCCTGACCCGAAGGGTAGAACACCCTAAGAGACATAAGAGACAGTCCCAGAATTATGCTGCACCTCCAATGTCTATACATGCTGTTGGCCTACTGTTGGAAGCGGTCCTGCTTAAAGCAAAATCATTGCAGGCTCTTGGAAGATTCAAAGAAGCTGCCCAATCTTGCAAAGTTATTCTGGACATAGTTGAATCTTCTTTACCTGAAGGCTTGCCTGAAAACTTTGGTGCTGAATGTAAATTGCAGGAGACTCTGAATAATGCAGTTGAGTTGCTTCCAGAATTATGGAAACTTGCTGATTGTCCACATGAAGCTATTTTGTCTTACCGACGAGCACTCCTTCATCAATGGAATCTTGATGCTGAGACTACAGCAAAGATTCAGAAAGAGTTTGTCATTTATCTTCTGTATAGTGGAGGGGAAGCAAGCCCCCCAAATCTCCGTTCCCAAATGGACAGCTCATTTGTGCCCAGAAACAACATAGAAGAGGCTATTCTTCTTTTGATGATTTTAGTAAGAAAAGTCACTCTAAATAGAATTAAGTGGGATCCTTCAATTTTAGACCACCTTTCATTTGCTTTATCTGTTTCTGGTGATTTGACAACTTTAGCTAATCAATTCAAAGAATTGCTCCCTGGTACTGTCAATCGAAGAGAAAGGTGTTTTACTCTTGCTCTCTGTTATTATGGAGCTGGTAAGGACTTGGTGGCACTGGATCTTCTCAGAAAATTGTTGAGTAGTAAAGAGGACCCAAAACATATTCCAGCTTTGTTAGCGGCATCTAAGATATGTTTTGAGAACCCTAGTCTTGCAGAAGAAGGGGTAAGCTTTGCACGTAGAGTGCTTGAGAGCTTAGATGGTAAATGCCGTAAGTTAGAAAGTGTTGCCAATTGCTTACTTGGTGTTTCACTTTCAGCGCATTCAAAATTGGCCATTTCTGATTCTGAGAGGTTTGAGAGGCAATATGAGGCACTTCGTGCCCTGAAAACTGCTGGCAGAATGACTAGAATAAGAGACCACAATGTATTGTACCATCTCAGTTTAGAATATGCAGAACAGAGAAAGTTGGATGCTGCCCTTTATTGTGCAAAATTCCTTTTAAAACTGGAAGCTGGGTCTAATGTTAAAGGGTGGTTATTGTTAGCTCGAATATTGTCAGCTCAAAAACGTTTTTCAGATGCTGAATCTATCATTAATGCTGCTTTGGATCAGACTGGGAAATGGGATCAAGGAGATTTGTTGCGAACAAAAGCTAAACTTCAAATTGTGCAGGGCCAGTTAAGGAGTGCCATTGAGACATATACTCAACTTCTAGCAGTTTTTCAAATTCAAAATAAAACATTTAGTTCTGGGAAAAAGCTTCTTAAGGAGAACAAAGATCATGGTAGGAACCTGGAAGTGGAAATATGGCATGATCTTGCTTATGTATATATAGGCCTGTTACAGTGGCAAGATGCTGAGATGTGTCTTTCTAAATCCAAGGCCATCAAACTATACTCTGCTTCTAGATGTCATGCAACAGGCAAACTGTACGAAGCAAAGGGTCTTTATAAAGAGGCTCTAAAAGCTTTTGGTGATGCCTTGGACATTGACTCCAATCATGTCCCAAGCTTGATTTCCAGTGCCATGGCTTTGAGACGGTGCAGTAGTAATGGATCAAATGCTGTAGCGAGAAGCTTCCTGATGGACGCACTACGTCATGAGAGGTTGAATGCTTGTGCATGGTATAATCTTGGCCTTGTTCACAAGGCTGAGGGTACAGCCTCATCATTAATCGAGGCTGCTGAATGTTTTGAGGTTGCTCATTTTCTTGAGGAAACTTCACCTGTTGAGCCTTTCATATGA 2154 0.4113 MKCLCSGEQLRRAEEMVPSSESLAAKDNSVSGDSSPAGLVDKKKPDTGNIEEAESSLRESGFLNYEEARALLGRYEFQKGNIEAALHVFEGIDIGAVTPKIKICLTRRVEHPKRHKRQSQNYAAPPMSIHAVGLLLEAVLLKAKSLQALGRFKEAAQSCKVILDIVESSLPEGLPENFGAECKLQETLNNAVELLPELWKLADCPHEAILSYRRALLHQWNLDAETTAKIQKEFVIYLLYSGGEASPPNLRSQMDSSFVPRNNIEEAILLLMILVRKVTLNRIKWDPSILDHLSFALSVSGDLTTLANQFKELLPGTVNRRERCFTLALCYYGAGKDLVALDLLRKLLSSKEDPKHIPALLAASKICFENPSLAEEGVSFARRVLESLDGKCRKLESVANCLLGVSLSAHSKLAISDSERFERQYEALRALKTAGRMTRIRDHNVLYHLSLEYAEQRKLDAALYCAKFLLKLEAGSNVKGWLLLARILSAQKRFSDAESIINAALDQTGKWDQGDLLRTKAKLQIVQGQLRSAIETYTQLLAVFQIQNKTFSSGKKLLKENKDHGRNLEVEIWHDLAYVYIGLLQWQDAEMCLSKSKAIKLYSASRCHATGKLYEAKGLYKEALKAFGDALDIDSNHVPSLISSAMALRRCSSNGSNAVARSFLMDALRHERLNACAWYNLGLVHKAEGTASSLIEAAECFEVAHFLEETSPVEPFI 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3065 717 SUPERFAMILY TPR-like 442 540 IPR011990 GO:0005515
Dere01g3065 717 Gene3D Tetratricopeptide repeat domain 551 712 IPR011990 GO:0005515
Dere01g3065 717 Pfam Tetratricopeptide repeat 607 637 IPR019734 GO:0005515
Dere01g3065 717 SMART tpr_5 604 637 IPR019734 GO:0005515
Dere01g3065 717 SMART tpr_5 136 169 IPR019734 GO:0005515
Dere01g3065 717 SMART tpr_5 478 511 IPR019734 GO:0005515
Dere01g3065 717 SMART tpr_5 570 603 IPR019734 GO:0005515
Dere01g3065 717 SMART tpr_5 514 547 IPR019734 GO:0005515
Dere01g3065 717 SMART tpr_5 443 476 IPR019734 GO:0005515
Dere01g3065 717 Gene3D Tetratricopeptide repeat domain 45 370 IPR011990 GO:0005515
Dere01g3065 717 PANTHER PROTEIN NPG1 1 716 IPR043376 -
Dere01g3065 717 SUPERFAMILY TPR-like 515 689 IPR011990 GO:0005515
Dere01g3065 717 MobiDBLite consensus disorder prediction 15 53 - -
Dere01g3065 717 ProSiteProfiles TPR repeat profile. 604 637 IPR019734 GO:0005515
Dere01g3065 717 Pfam Tetratricopeptide repeat 451 507 - -
Dere01g3065 717 Gene3D Tetratricopeptide repeat domain 416 550 IPR011990 GO:0005515
Dere01g3065 717 SUPERFAMILY TPR-like 292 474 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3065 Dere-ChrDere01 45172133 45177451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3065 1 716 Calmodulin-binding Proteins AT4G28600 58.345 0.0 784
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g0828 02 7814768 7818457 Dere01g3065 01 45172133 45177451 CCT
Dere01g3065 01 45172133 45177451 Dere01g3065 01 45172133 45177451 ECH