Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3061 ATGGAGGAATCTGGGAAGCATAGCAACATCAAATTCTTGAATCCATGGATGCTTCTGTTCCAGAAATTGGGTCTTGAATTCAAGTGCCCTCTCTGTTTGAAGTTATTTAAAAGGCCGATGTTACTGCCATGCAACCACATATTCTGCAATTCCTGCATAGCTGATAGCTCGACGGCTGGTTCAGAATGTGCTGTCTGTAATATTCATTATGCTCCAAGAGATCTAAGGTCTGTGCCTTTTGTGGAAAACATGGTTGCAATCTATAGAAGCCTGGATGTTGCCTTTTGTGCCCATCTGTCTCAGAAACATGATCCAATGGTTTCAGAGCAGTGCGAAATGTTGTTGAATTCAACTATGAATGATAAAATGACTGAAGAGCCGCTCAAAACAACTCTTGGAGATAGTCTACATAGGGGGCAGTCAGTCTTTTCAAAAACAACAGCTAAATATGTTAAGGATCCCTTGAGTTTACACCATTCTATGGAAGTTGGGATTGGCAACAATAACAAATATGACAAGAGTGGTATTAAGGTGCATAGTAAAGCTGAGGAGTTTGAGATTTCTTGCAAGGATGGCATTGCTTTTAGTAGTGCAGAAGAGCCTAATCGGTTGAAATGTTCCCAGCTGGATGGAGGGGCCTTTGGAGAGTGTGGTGTTGTGGAAATGGACATGAATCAAGTAACTCAATCATCACCAGACAGCCCTCCACTTTGTGACACCAAAGGTTCAGACAATGACTGCAGTGATCAAGACAGTGAGCATCGCTTGCCTGATGAGGGATTGGAAAGTTCTTCATTGAGGAGAGCCAGCAAAGAAAATGAAATTTTGGAGAAAAGGATGCAGTTAAGGTCTGAAAGCTCTGCCTCTGAGACGGAGGGTGTTGTGAGAGCGCTCAAGAGGCAAAAAAATCTTTCGCATGGGAATGATGACATTCAACCTAGTGTAACCCATCATAGCAAGCCTGTCGCTTCCAGTGGTAACCTGGACGTTAAATCTGGAATGGATCCTGATTCATCTTCATATACAAGCATCTGTTCTTTTTGCCAATCCTCCGAAACCTCAGAGGTTACTGGGCCAATGTTGCACTACAGAAATGGTAATTTGGTGACAGGAGATGCAGCACTCCAACCAAATGTCATACATGTGCATAGATCATGCATTGACTGGGCACCTCAAGTGTATTTTGTTGATGACGCTGTTAAGAATTTGACCTCGGAAGTGGCAAGGGGTGCAAAGCTAAAATGCAGCAAATGTGGCCTAAAGGGTGCTGCTCTTGGCTGCTATGTCAGATCCTGTCGAAGAACTTATCATTTTCCTTGTGCAATGGAAATCTCTGTTTGCCGTTGGGATGATGTAGTTCGCTTCTCTCCTATTTATTCTTTTTGGGAGGATTTTCTTATGCTCTGTCCAGCTCATTCTCATGTCAGGTTTCCATGTGAGAAATCCAAGTCTAAAAAACAGGCCTCCCAGAAACATCCTGTGCCATCTCATTTAGTATTGCAGCAGTCAAAATCCCCAGTGGCTTCATCTGCTGATAGTAAACGTTTGGTTTTATGTGGATCTGCTATGTCTATTGATGAAAAGGTTTATTTGCTCAATTTTGCAAGAAGGATTGGTGGTACTGTTACCAAGTTTTGGACTCCGGATGTGACACATGTGATTGCAGCAACTGATGCAAATGGAGCGTGCTCCAGGACGATCAAAGTACTAAAGGCCATTTTAAATGGCCAATGGATTCTCAAAATGGATTGGATAAATGCAAGCCTGGAAGTGATGCGTCCTGTGGAAGAAGAACCATATGAAATTAGTCTTGATAATTATGGGTGTCAAGGTGGCCCAAAAGCTGGCAGAGTTAGGGCATTGGCCAATGAGCCCAAGCTATTTAGTGGCTTAAAGGCGTACTTTTCTGGTGATTACATGCCAGATTATAAGGCGGATCTTGTAGACTTGGTTGTAGCAGGAGGAGGTACTGTCTTTGAAACCAAGGAAGAATTGGTAGCAGAAAGTCATAAATGCAAGATCTCAAAGCTGATTGTCTACAATCTTGATCCCCCACGAGGAAGTAGGTTGGGCGATGAAGTTACAATTCTTTGGGAGAGATTAAATGAGGCAGGGGATTTAGCCGCTACCACTGGTTCCCAAGTCGTTGGTCACACATGGATTCTGGAGTCAATTGCCGCATGCAGGTTGCAGCCTTTTATTAGCTAG 2208 0.433 MEESGKHSNIKFLNPWMLLFQKLGLEFKCPLCLKLFKRPMLLPCNHIFCNSCIADSSTAGSECAVCNIHYAPRDLRSVPFVENMVAIYRSLDVAFCAHLSQKHDPMVSEQCEMLLNSTMNDKMTEEPLKTTLGDSLHRGQSVFSKTTAKYVKDPLSLHHSMEVGIGNNNKYDKSGIKVHSKAEEFEISCKDGIAFSSAEEPNRLKCSQLDGGAFGECGVVEMDMNQVTQSSPDSPPLCDTKGSDNDCSDQDSEHRLPDEGLESSSLRRASKENEILEKRMQLRSESSASETEGVVRALKRQKNLSHGNDDIQPSVTHHSKPVASSGNLDVKSGMDPDSSSYTSICSFCQSSETSEVTGPMLHYRNGNLVTGDAALQPNVIHVHRSCIDWAPQVYFVDDAVKNLTSEVARGAKLKCSKCGLKGAALGCYVRSCRRTYHFPCAMEISVCRWDDVVRFSPIYSFWEDFLMLCPAHSHVRFPCEKSKSKKQASQKHPVPSHLVLQQSKSPVASSADSKRLVLCGSAMSIDEKVYLLNFARRIGGTVTKFWTPDVTHVIAATDANGACSRTIKVLKAILNGQWILKMDWINASLEVMRPVEEEPYEISLDNYGCQGGPKAGRVRALANEPKLFSGLKAYFSGDYMPDYKADLVDLVVAGGGTVFETKEELVAESHKCKISKLIVYNLDPPRGSRLGDEVTILWERLNEAGDLAATTGSQVVGHTWILESIAACRLQPFIS 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3061 735 MobiDBLite consensus disorder prediction 489 506 - -
Dere01g3061 735 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 98 IPR013083 -
Dere01g3061 735 CDD ePHD 345 472 - -
Dere01g3061 735 ProSiteProfiles Zinc finger RING-type profile. 29 67 IPR001841 -
Dere01g3061 735 SUPERFAMILY BRCT domain 516 603 IPR036420 -
Dere01g3061 735 MobiDBLite consensus disorder prediction 226 243 - -
Dere01g3061 735 FunFam Breast cancer type 1 susceptibility protein homolog 513 619 - -
Dere01g3061 735 MobiDBLite consensus disorder prediction 307 327 - -
Dere01g3061 735 Pfam BRCA1 C Terminus (BRCT) domain 533 589 IPR001357 -
Dere01g3061 735 Gene3D BRCT domain 625 728 IPR036420 -
Dere01g3061 735 Gene3D BRCT domain 512 618 IPR036420 -
Dere01g3061 735 MobiDBLite consensus disorder prediction 244 285 - -
Dere01g3061 735 Pfam PHD-like zinc-binding domain 383 472 - -
Dere01g3061 735 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Dere01g3061 735 Pfam Zinc finger, C3HC4 type (RING finger) 28 66 - -
Dere01g3061 735 SMART ring_2 29 66 IPR001841 -
Dere01g3061 735 CDD BRCT_Bard1_rpt1 516 595 - -
Dere01g3061 735 SUPERFAMILY RING/U-box 26 89 - -
Dere01g3061 735 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 205 732 IPR031099 GO:0006281|GO:0006974
Dere01g3061 735 SUPERFAMILY BRCT domain 627 733 IPR036420 -
Dere01g3061 735 SMART BRCT_7 625 728 IPR001357 -
Dere01g3061 735 SMART BRCT_7 509 592 IPR001357 -
Dere01g3061 735 MobiDBLite consensus disorder prediction 486 506 - -
Dere01g3061 735 ProSiteProfiles Extended PHD (ePHD) domain profile. 342 473 IPR034732 -
Dere01g3061 735 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 339 475 IPR013083 -
Dere01g3061 735 MobiDBLite consensus disorder prediction 226 327 - -
Dere01g3061 735 ProSiteProfiles BRCT domain profile. 516 602 IPR001357 -
Dere01g3061 735 ProSiteProfiles BRCT domain profile. 623 735 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3061 Dere-ChrDere01 45125081 45130474 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3061 546 661 Core DNA Replication Machinery Family AT4G02110 33.607 6.35e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3061 01 45125081 45130474 Dere01g3061 01 45125081 45130474 ECH