Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3059 ATGCAAAAGCTTGCGAATGCTGGGTTAGGCATGACCATTCAAAAAGCCCCTTCTTTCCCCTTTCATGTACTCTTCCTATTCTTTCTTCCATTGCAGATCGCTGCATCTGCATCACCGAGAACAGAAGCAGAAGCTCTTATCAAATGGAAAACCAGCCTCTCCCCTCCTCTTCCTTCTTTTCTCAGTTCATGGTCCATCACCAACCTCAACAAACTCTGCCATTGGGAAGCCATTGTTTGTGATAATACTAACACAACAATCTCAAAGATAGATCTCTCTGACGCAAACCTCACAGGGACACTTGATAAGTTGGATTTTGCTTCTCTTCCCAATCTCACCCTCTTAAACCTCAGAAGCAACAGTTTCAGTGGGTTAATTCCTTCTGCAATTCGAAACCTCCCCAAGCTCACTTTCCTGGACCTCGGATCAAACTTGTTTGAAGGAACAGTTCCTTCTGAGCTGGGTCAGCTAAAGCAGCTTCAATATCTTAGTGTTTATAACAACAATCTCAATGGTACCATTCCTTATCAGCTCACAAATCTTACTAAGGTATGGTACCTAGACCTTGGCTTGAACTACTTTATATCCCCTGCTGATTGGTCACAATTCTCAGGAATGTCATCTTTAACTCACCTCAGTTTGACTCTCAATTCTTTAACTTCTGAATTCCCAAGTTTTATACTAGAGTGTCAGAACTTGACATACCTTGACATCTCTCAGAATGGGATAACTGGCCTGATACCAGAATCCATGTATACCAGTCTAGGTAAGCTTGAATACCTCAATCTCACCAATTGCGGGCTAGAAGGACCTGTGTCATCAAACTTGTTCAAGCTTTCCAATCTAAAAGAACTTCGCCTGGGGAGTAACAAGTTTACTGGTCCGATTCCCACAGAATTAGGATTGATATCTGGGCTTCAACTTCTTGAATTGAATAACAATTCCATTGGAGGGGAAATTCCTTCCTCACTAGGAAAGCTCAGGGATCTAGTGATACTTGATCTTCGTCAGAATTTTTTGAATACTACAATCCCTTCCGAGCTTGGCTTCTGTACCAATCTAACCTTCCTGAGTTTGGCAGTGAATAATTTGACTGGTCCTTTGCCTTCTTCATTATCTAACCTGACCAAAATATCAGACTTGGGGTTATCAGAAAATTCTTTTTCTGGTCAGCTTTCGTCTTCGTTGATCTCCAATTGGCCGGAGTTGATCTCTTTGCAACTTCAGAACAATAAATTCAGTGGAAAACTTCCTCCAGAGATTGGCTTGTTGACAAAAATCACATACCTGTTTCTATATAATAACGAGTTCTCTGGTCCCATTCCTCAGGAGATTGGAAACTTGAAAGCTATGATGCAATTAGACCTTTCAGGAAACCGATTCTTCGGCCCAATTCCTCTTACTATTTGGAGTCTTACAAACATTACAACCATAAATATATTCTCCAATAAACTCTCTGGAACCATTGCCATGGATATTGGAAACTTGACCTTTCTGCAAGTTTTTGATGTCAACACTAACAATTTGCATGGAGAGTTGCCAGAGACTATTTCTCAGCTGACTGAGTTACAGTCATTTTCTGTGTTCTCCAACAACTTTTCAGGTAAAATTCCCTGGAATTTTGGGAAGTATAGTCCTTCTTTGAGTCGTGTCAGCTTCTCAAACAACAGCTTCTCTGGGGAACTACCTGGTGACTTGTGCAGTGGTTTCAAGCTAACAGCTTTGACTGTGAATAACAACAGCTTTTCTGGGCAACTGCCAAAGTGCTTGAGAAATTGTTCAGAACTAGTTAGAGTGCGGCTTGATGGAAATCACTTCACAGGAAACATCACGGAAGCATTTGGAGTTCACCCCAATCTTTTCTTTATCTCACTGAGCGGCAATCAATTTGTTGGTGAGCTCTCTCCTTTGTGGAGTGAATGTTTAAAGTTAAGCAGGATAGAGATGGACAGAAATAAACTCTCTGGTAAAATTCCATCTGAACTGAGTAAGTTGAGCCAACTGCAATATCTAAGCCTGCACTCCAATGAATTGACTGGCAATATTCCACTTGAAATGGGGAATCTAAGCCAGCTTTACATGTTCAACTTGAGCAGGAACCATCTGACAGGACAGATCCCACAGACTATTGCCAGATTGGCTCATCTTGATTATCTTGATTTATCGGATAACAACTTCACTGGAAGCATACCGAAAGAGCTTGGTAACCATGATGGCTTAATGAGCTTGAATTTAAGCCACAACAATCTATCTGGGGAAATACCGTCTGAGCTTGGCAATCTGTTCTCACTACAGTACTTCTTGGATCTCAGTAGCAACTCTCTTTCAGGGCCCATTCCTCAAAACCTTGAAAAGCTCACTTCTTTGATGATTCTCAATCTCTCACACAACCATCTTTCAGGGACAATCCCTCAAACCTTTTCAAATATGCTCAGCCTTCAATCTGTTGATTTTTCTAATAACAACTTGACGGGTTCAATCCCAAGTGGGGGTATTTTCCAAACAGCACCTGCTGAGGCTTATGTAGGGAACTTTGGCTTGTGTGGGGAAGGAAAGGGATTAACTGCTTGCTTCATAGCATCTGCCCCAAACGAGTCCAAAGGGTTGAACAAAAAGGTTCTTCTTGGGGTAATTGTACCAGTCTGTGGGCTATTAATTACGGGGATGATTGTTATTGGAATCCTAGTGTTCCGTCGGCACGCCAAACCCGTAGATGAAGAGACCAAAGATAGTGAAAAGAATGAAAAATCTATATCCATGGTATGGGGAAGAGATGGAAAATTCACATTTGCTGAAATTGTCAAGGCAACCAACAATTTCAATGAGGAGTACTGCATAGGGAAAGGAGGATTTGGAAGCGTTTATAGAGCAGTACTGCCAACAGGTTTAGTTGTTGCAGTTAAAAGGCTCAATATCTCAGACTCCAGTGACATTCCAGCAGTGAATCGCCAAAGTTTTGAGAATGAGATAAGAACACTTACAGAAGTGAGGCACCGCAATATCATCAGGTTTTATGGGTTCTGTTCCAGCAGGGGATGCGTGTACTTGGTGTGTGAATACATGGACAGAGGCAGTTTGGGAAAAGTACTATACGGGGAGGAAGGTAAAATAGAACTAAACTGGCCTATTAGGCTAAGGATAATACAAGGAATAGCACATTCCATTGCCTACCTTCATAGTGATTGTTCCCCACCAGTAGTACATCGAGATGTGACGCTCAATAACATATTATTGGACTCAGATTTAGAACCCCGCCTTGCAGATTTTGGCACAGCAAAGCTACTAAGCTCCAATTCAACAACCTGGACCTCAGTTGCTGGGTCCTACGGCTACATGGCTCCAGAGCTAGCACAAACCATGAGAGTCACGGAGAAGTGCGATGTGTATAGCTTTGGAGTGGTGGCATTAGAGATAGTAATGGGGAAGCACCCAGGAGATCTCCTAACTTCGATTTATTCAATGAAGCAATTGTCATCAATGGAGGATTCAGAGGTGTTTCTGAAGGACGTGGTGGACCAGAGGATTCCACCTCCAAGCGGCCAATTAGCTGAAGCAATAGCGTTCATAGTGACGATAGGGTTGGCATGCACGCAAAACAATCCAGAGTCGAGACCCACGATGCGTTCTGTGGCGCAAGAACTATCAGCTAGGACGCAACCTTGTCTTCCACAGCCCTTTGGGACGATGACCATAAGCAAGTTAACGGGGTATCCGAAGTAG 3720 0.4266 MQKLANAGLGMTIQKAPSFPFHVLFLFFLPLQIAASASPRTEAEALIKWKTSLSPPLPSFLSSWSITNLNKLCHWEAIVCDNTNTTISKIDLSDANLTGTLDKLDFASLPNLTLLNLRSNSFSGLIPSAIRNLPKLTFLDLGSNLFEGTVPSELGQLKQLQYLSVYNNNLNGTIPYQLTNLTKVWYLDLGLNYFISPADWSQFSGMSSLTHLSLTLNSLTSEFPSFILECQNLTYLDISQNGITGLIPESMYTSLGKLEYLNLTNCGLEGPVSSNLFKLSNLKELRLGSNKFTGPIPTELGLISGLQLLELNNNSIGGEIPSSLGKLRDLVILDLRQNFLNTTIPSELGFCTNLTFLSLAVNNLTGPLPSSLSNLTKISDLGLSENSFSGQLSSSLISNWPELISLQLQNNKFSGKLPPEIGLLTKITYLFLYNNEFSGPIPQEIGNLKAMMQLDLSGNRFFGPIPLTIWSLTNITTINIFSNKLSGTIAMDIGNLTFLQVFDVNTNNLHGELPETISQLTELQSFSVFSNNFSGKIPWNFGKYSPSLSRVSFSNNSFSGELPGDLCSGFKLTALTVNNNSFSGQLPKCLRNCSELVRVRLDGNHFTGNITEAFGVHPNLFFISLSGNQFVGELSPLWSECLKLSRIEMDRNKLSGKIPSELSKLSQLQYLSLHSNELTGNIPLEMGNLSQLYMFNLSRNHLTGQIPQTIARLAHLDYLDLSDNNFTGSIPKELGNHDGLMSLNLSHNNLSGEIPSELGNLFSLQYFLDLSSNSLSGPIPQNLEKLTSLMILNLSHNHLSGTIPQTFSNMLSLQSVDFSNNNLTGSIPSGGIFQTAPAEAYVGNFGLCGEGKGLTACFIASAPNESKGLNKKVLLGVIVPVCGLLITGMIVIGILVFRRHAKPVDEETKDSEKNEKSISMVWGRDGKFTFAEIVKATNNFNEEYCIGKGGFGSVYRAVLPTGLVVAVKRLNISDSSDIPAVNRQSFENEIRTLTEVRHRNIIRFYGFCSSRGCVYLVCEYMDRGSLGKVLYGEEGKIELNWPIRLRIIQGIAHSIAYLHSDCSPPVVHRDVTLNNILLDSDLEPRLADFGTAKLLSSNSTTWTSVAGSYGYMAPELAQTMRVTEKCDVYSFGVVALEIVMGKHPGDLLTSIYSMKQLSSMEDSEVFLKDVVDQRIPPPSGQLAEAIAFIVTIGLACTQNNPESRPTMRSVAQELSARTQPCLPQPFGTMTISKLTGYPK 1239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3059 1239 ProSitePatterns Protein kinases ATP-binding region signature. 946 968 IPR017441 GO:0005524
Dere01g3059 1239 FunFam MDIS1-interacting receptor like kinase 2 39 200 - -
Dere01g3059 1239 SMART LRR_typ_2 713 737 IPR003591 -
Dere01g3059 1239 SMART LRR_typ_2 327 351 IPR003591 -
Dere01g3059 1239 SMART LRR_typ_2 279 303 IPR003591 -
Dere01g3059 1239 SMART LRR_typ_2 665 689 IPR003591 -
Dere01g3059 1239 SMART LRR_typ_2 206 230 IPR003591 -
Dere01g3059 1239 SMART LRR_typ_2 133 157 IPR003591 -
Dere01g3059 1239 SMART LRR_typ_2 786 809 IPR003591 -
Dere01g3059 1239 SMART LRR_typ_2 810 835 IPR003591 -
Dere01g3059 1239 SMART LRR_typ_2 109 132 IPR003591 -
Dere01g3059 1239 SMART LRR_typ_2 496 520 IPR003591 -
Dere01g3059 1239 PRINTS Leucine-rich repeat signature 233 246 - -
Dere01g3059 1239 PRINTS Leucine-rich repeat signature 786 799 - -
Dere01g3059 1239 Pfam Protein kinase domain 942 1212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3059 1239 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 545 860 - -
Dere01g3059 1239 SUPERFAMILY RNI-like 531 828 - -
Dere01g3059 1239 FunFam MDIS1-interacting receptor like kinase 2 1021 1220 - -
Dere01g3059 1239 Pfam Leucine rich repeat 88 145 IPR001611 GO:0005515
Dere01g3059 1239 Pfam Leucine rich repeat 208 268 IPR001611 GO:0005515
Dere01g3059 1239 Pfam Leucine rich repeat 667 726 IPR001611 GO:0005515
Dere01g3059 1239 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1066 1078 IPR008266 GO:0004672|GO:0006468
Dere01g3059 1239 Pfam Leucine rich repeat N-terminal domain 41 81 IPR013210 -
Dere01g3059 1239 CDD STKc_IRAK 946 1214 - -
Dere01g3059 1239 Gene3D Phosphorylase Kinase; domain 1 901 1020 - -
Dere01g3059 1239 Gene3D Ribonuclease Inhibitor 199 297 IPR032675 -
Dere01g3059 1239 Gene3D Ribonuclease Inhibitor 39 198 IPR032675 -
Dere01g3059 1239 Gene3D Ribonuclease Inhibitor 397 492 IPR032675 -
Dere01g3059 1239 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 396 489 - -
Dere01g3059 1239 SUPERFAMILY Protein kinase-like (PK-like) 917 1214 IPR011009 -
Dere01g3059 1239 FunFam Leucine-rich repeat receptor protein kinase MSP1 903 1020 - -
Dere01g3059 1239 Gene3D Ribonuclease Inhibitor 493 858 IPR032675 -
Dere01g3059 1239 SUPERFAMILY L domain-like 350 538 - -
Dere01g3059 1239 Pfam Leucine Rich Repeat 789 810 IPR001611 GO:0005515
Dere01g3059 1239 Gene3D Transferase(Phosphotransferase) domain 1 1021 1221 - -
Dere01g3059 1239 FunFam MDIS1-interacting receptor like kinase 2 204 395 - -
Dere01g3059 1239 PANTHER RECEPTOR-LIKE PROTEIN 55 693 1215 - -
Dere01g3059 1239 Gene3D Ribonuclease Inhibitor 298 396 IPR032675 -
Dere01g3059 1239 ProSiteProfiles Protein kinase domain profile. 940 1222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3059 1239 SUPERFAMILY L domain-like 51 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3059 Dere-ChrDere01 45114160 45117991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3059 11 711 Receptor kinase-like Gene Family AT4G08850 31.683 1.13e-86 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere01g3059 Pkinase 1.5e-46 CL0016