Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3058 ATGCGTCACAGGGCCAAGAGGGCAAAGGCAAGGCGCACTCGTTGCCGTTCACTTCCTTGGCTTGCCGCTTCCTGTGAACTTCTGGGTAAGATTTTGACACCCCGTTTTCGTGGTTTCCAGGGCATCGCCATTTTTATTCGTAGAGAATCTGTTAGTGCCAAGTGCCCTTGCGGAGCTCTGCTTCAAATTCGTGCTTTTCAGCGTGTATTGGGTCCTAATCGCAGTCGGTTACTCCTCCTCATGGATACTTAGTTTTGTTGGGAAATAATGGAGGCACGCCCTGCTTTTTCCATTGAAAGATCAAGTGCAAAGCAGCTCAGCAGTATGGGGATGTCAGGGGCATTGTCTTCATCCTTGCTTGTCCACCCAACACCCCTAGAAGAGACATATCCAAAGCTACCAGATTCTCAGCAGGCTTTTGTGGAAAAAGAGCTCATGACAATACCTCTTGCTCATTCAAGTCATTTAAATTCCAGTGGAGTAGTTGGGCACATGTTTTCATCATCCCCTGGATATTCAACCAATCTTCATCACTCATCCCTTTCACCTCATGAAAAACACTCAAGAAATGCCCATTCTATTTCACCGTCATCAAGTAACATGGCATCATTGCCTTTGTCATATTCTTCAAGTACTGGACCACTACCTTCTACAACATCAAATTTTTATCCCAAAGAAAGCAATGTGTCCTGGGGTACAGATTCCCTGTCAAGCTTTCTTGATTTTCCTGTAAATACTTCCATTAATAATAGTCTAGTGGAAAGCAGTGCCTGCAATATAATGGCTTCTGAGGAGTATGGTAAGAGAAATGATTGGCAGGAGTGGGCTGAGCAGCTAATCAGTGATGATGACACTTTGGGTTCTAATTGGAATGACATTCTCGTTGACCCCAGTATTCATGATCTTGAACCAAAGGAGTCATGCCAGGTTTCAAAATCATCCTCACAATTTCCAGGACAACAGTCCCAAGGTCATCAGCAACTTCCAACTTCATCCGCAGAAAATTGTGTTAGTGCTCCACCCTCTTCCTCAGCAAATTCTGCTCCTGCCAAGCCACGAATGCGTTGGACACCAGAGCTACACGAGGCCTTTGTGGAGGCTGTGAACCAGCTTGGTGGGAGTGAAAGAGCAACCCCTAAGGGTGTACTGAAACTCATGAAAGTTGAAGGCTTAACAATATATCATGTTAAAAGCCACTTGCAGAAATATAGGACAGCTAGATATAGACCAGAGTCATCTGAAGGATCCTCAGAGAAAAAATTAACTCCCATGGAAGAGATTTCATCTCTAGACTTGAAAACTGGTTTTGAAATCACTGAAGCTCTGAGACTGCAGATGGAAGTTCAGAAGCGGCTGCATGAACAGCTTGAGATTCAAAGGAATTTACAGTTGCGGATTGAAGAACAAGGAAGGAACCTCCAGATGATGTTTGAGAGACAATGCAAATCTGGCGTTGAAAAGTTTAAGGCAGCATCATCTGCCATAGAAAGTCCCTCTGGAGTGTCATCAGATGCTATCAAAGATTCTTCTGCCAAAAGTGAAATGGAAGCCTCGCATGTGGACCGTTTCATGTCAGGAACTGAGCAAAATTATAGCAACACCATAGTCGAAGAAAGCTCATTGAAAGTTGACAAGCATAGTGCTCCTGAAAGTCAAACTTCTGATAATACTAAGCAACATAATAGTGAAGACAATGCTCTCCCCTCAAAGCGTCAAAAGACAGATGAATAA 1731 0.4385 MRHRAKRAKARRTRCRSLPWLAASCELLGKILTPRFRGFQGIAIFIRRESVSAKCPCGALLQIRAFQRVLGPNRSRLLLLMDTXFCWEIMEARPAFSIERSSAKQLSSMGMSGALSSSLLVHPTPLEETYPKLPDSQQAFVEKELMTIPLAHSSHLNSSGVVGHMFSSSPGYSTNLHHSSLSPHEKHSRNAHSISPSSSNMASLPLSYSSSTGPLPSTTSNFYPKESNVSWGTDSLSSFLDFPVNTSINNSLVESSACNIMASEEYGKRNDWQEWAEQLISDDDTLGSNWNDILVDPSIHDLEPKESCQVSKSSSQFPGQQSQGHQQLPTSSAENCVSAPPSSSANSAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGSSEKKLTPMEEISSLDLKTGFEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRNLQMMFERQCKSGVEKFKAASSAIESPSGVSSDAIKDSSAKSEMEASHVDRFMSGTEQNYSNTIVEESSLKVDKHSAPESQTSDNTKQHNSEDNALPSKRQKTDE 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3058 576 Coils Coil 439 459 - -
Dere01g3058 576 MobiDBLite consensus disorder prediction 174 210 - -
Dere01g3058 576 SUPERFAMILY Homeodomain-like 349 405 IPR009057 -
Dere01g3058 576 FunFam Myb family transcription factor 350 408 - -
Dere01g3058 576 MobiDBLite consensus disorder prediction 304 355 - -
Dere01g3058 576 Pfam MYB-CC type transfactor, LHEQLE motif 437 483 IPR025756 -
Dere01g3058 576 MobiDBLite consensus disorder prediction 192 210 - -
Dere01g3058 576 Gene3D - 350 409 - -
Dere01g3058 576 MobiDBLite consensus disorder prediction 498 576 - -
Dere01g3058 576 NCBIfam myb-like DNA-binding domain, SHAQKYF class 351 405 IPR006447 GO:0003677
Dere01g3058 576 Pfam Myb-like DNA-binding domain 353 404 IPR001005 -
Dere01g3058 576 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 348 408 IPR017930 -
Dere01g3058 576 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 318 563 IPR044848 GO:0003700
Dere01g3058 576 MobiDBLite consensus disorder prediction 308 350 - -
Dere01g3058 576 MobiDBLite consensus disorder prediction 523 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3058 Dere-ChrDere01 45106822 45112704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3058 90 516 G2-like Transcription Factor Family AT4G28610 48.966 3.05e-105 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere01g3058 Myb_DNA-binding 1.1e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3058 01 45106822 45112704 Dere02g0838 02 7917884 7922264 CCT
Dere01g3058 01 45106822 45112704 Dere01g3058 01 45106822 45112704 ECH
Dere01g3058 01 45106822 45112704 Dere02g0838 02 7917884 7922264 ECH